NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
Finding cDNAs

UGID:1119353     UniGene Mm.320317     Mus musculus (mouse)   Cux1
Cut-like homeobox 1 (Cux1)

Mouse protein-coding gene Cux1. Represented by 346 ESTs from 159 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 1119353 - Mm.320317]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_034116.3 Cux1 gene product M. musculus 100.0 1425
NP_853530.2 protein CASP isoform a H. sapiens 94.8 1504
XP_003199414.1 PREDICTED: LOW QUALITY PROTEIN: si:ch211-251d10.5 D. rerio 71.7 1454
Other hits (2 of 27) [Show all]SpeciesId(%)Len(aa)
XP_003752628.1 PREDICTED: cut-like homeobox 1 isoform 3 R. norvegicus 98.8 1527
XP_001916140.1 PREDICTED: LOW QUALITY PROTEIN: cut-like homeobox 1 E. caballus 95.9 1192

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; embryonic tissue; eye; kidney; testis; thymus; prostate; pituitary gland; lung; joint; extraembryonic tissue; skin; mixed; pancreas; mammary gland; bone marrow; liver; inner ear; stomach; uncharacterized tissue; spleen; ovary; heart; intestine; lymph node; connective tissue; bladder; salivary gland; dorsal root ganglion; tongue; fertilized ovum
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 5
Map position: 5 G2|5 75.96 cM
UniSTS entry: Chr 5 RH125658
UniSTS entry: Cutl1
UniSTS entry: Chr 5 PMC133930P1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (30)

BC054370.1 Mus musculus cut-like homeobox 1, mRNA (cDNA clone IMAGE:5366857), partial cds PA
NM_198602.2 Mus musculus cut-like homeobox 1 (Cux1), transcript variant 2, mRNA P
BC079570.1 Mus musculus cut-like homeobox 1, mRNA (cDNA clone IMAGE:5685757), complete cds PA
AK220118.1 Mus musculus cDNA, clone:Y2G0150N19, strand:unspecified
AK212861.1 Mus musculus cDNA, clone:Y2G0126F18, strand:unspecified
AK210477.1 Mus musculus cDNA, clone:Y2G0118I24, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000065599, based on BLAT search P
AK210113.1 Mus musculus cDNA, clone:Y2G0117G02, strand:unspecified
AK198783.1 Mus musculus cDNA, clone:Y1G0129C23, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000065599, based on BLAT search P
AK193727.1 Mus musculus cDNA, clone:Y1G0113D01, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000065599, based on BLAT search P
AK189368.1 Mus musculus cDNA, clone:Y0G0148O15, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000065599, based on BLAT search P
AK181592.1 Mus musculus cDNA, clone:Y0G0118L14, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000065599, based on BLAT search P
AK220173.1 Mus musculus mRNA for mKIAA4047 protein P
BC090847.1 Mus musculus cut-like homeobox 1, mRNA (cDNA clone MGC:102214 IMAGE:30547458), complete cds PA
AK143193.1 Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130305D04 product:cut-like 1 (Drosophila), full insert sequence P
AK133543.1 Mus musculus adult male xiphoid cartilage cDNA, RIKEN full-length enriched library, clone:5230400P15 product:cut-like 1 (Drosophila), full insert sequence P
AK144932.1 Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length enriched library, clone:G830007P08 product:cut-like 1 (Drosophila), full insert sequence P
AK131704.1 Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:1700015N17 product:cut-like 1 (Drosophila), full insert sequence P
AK161760.1 Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830469B04 product:cut-like 1 (Drosophila), full insert sequence P
X75013.1 M.musculus Cux mRNA for homeodomain protein P
U66249.1 Mus musculus Cut alternatively spliced product (CASP) mRNA, partial cds PA
U46683.1 Mus musculus cut-related homeobox Cux-1 (Cutl1) mRNA, partial cds P
U68542.1 Mus musculus mCASP (cux) mRNA, complete cds P
U46684.1 Mus musculus cut-related homeobox Cux-1 (Cutl1) mRNA, testis-specific splice variant, complete cds PA
AF004225.1 Mus musculus Cux/CDP homeoprotein (Cux/CDP(1B1)) mRNA, alternatively spliced, partial cds P
NM_009986.3 Mus musculus cut-like homeobox 1 (Cux1), transcript variant 1, mRNA P
AB041595.1 Mus musculus brain cDNA, clone MNCb-2844, similar to Mus musculus mCASP (cux) mRNA PA
AK006420.1 Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:1700027H22 product:cut (Drosophila)-like 1, full insert sequence P
AY037807.1 Mus musculus CCAAT displacement protein CDP (Cutl1) mRNA, complete cds P
BC014289.1 Mus musculus cut-like homeobox 1, mRNA (cDNA clone IMAGE:4224923), complete cds PA
AK098096.1 Mus musculus cDNA fis, clone TRACH2005314,highly similar to Mus musculus mCASP (cux) mRNA P

EST sequences (10 of 346) [Show all sequences]

CA571025.1 Clone NIA:K0514G10_IMAGE:30065265 bone marrow 5' read
CA750755.1 Clone IMAGE:6829363 brain 5' read P
BY000300.1 Clone 1020002K19 heart 5' read
BY000794.1 Clone 1200014C16 lung 5' read
BY013682.1 Clone G730040M16 lung 5' read P
BY015702.1 Clone G830011P17 mammary gland 5' read
BY019862.1 Clone G830037L10 mammary gland 5' read P
BY337094.1 Clone L230005E18 joint 5' read P
BY338292.1 Clone L230013E23 joint 5' read P
BY342290.1 Clone L230039C21 joint 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help