NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
Finding cDNAs

UGID:1118672     UniGene Mm.319636     Mus musculus (mouse)   C1qtnf9
C1q and tumor necrosis factor related protein 9 (C1qtnf9)

Mouse protein-coding gene C1qtnf9. Represented by 14 ESTs from 6 cDNA libraries. EST representation biased toward juvenile. Corresponds to reference sequence NM_183175.4. [UniGene 1118672 - Mm.319636]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_898998.2 C1qtnf9 gene product M. musculus 100.0 332
NP_848635.2 complement C1q and tumor necrosis factor-related protein 9A precursor H. sapiens 85.5 332
NP_001107934.1 c1qtnf9 gene product D. rerio 56.8 325
Other hits (2 of 23) [Show all]SpeciesId(%)Len(aa)
XP_344415.4 PREDICTED: C1q and tumor necrosis factor related protein 9 R. norvegicus 97.3 330
XP_851299.1 PREDICTED: complement C1q tumor necrosis factor-related protein 9A C. lupus familiaris 88.2 332

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: juvenile [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: mammary gland; embryonic tissue; mixed; intestine; thymus
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 14
Map position: 14 D1|14
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (5)

AK033673.1 Mus musculus adult male cecum cDNA, RIKEN full-length enriched library, clone:9130217G22 product:hypothetical Complement C1q protein domain containing protein, full insert sequence P
NM_183175.4 Mus musculus C1q and tumor necrosis factor related protein 9 (C1qtnf9), mRNA P
DQ002401.1 Mus musculus C1qTNF9 (C1qtnf9) mRNA, complete cds P
BC115632.1 Mus musculus C1q and tumor necrosis factor related protein 9, mRNA (cDNA clone MGC:144536 IMAGE:40102920), complete cds P
BC115633.1 Mus musculus C1q and tumor necrosis factor related protein 9, mRNA (cDNA clone MGC:144537 IMAGE:40102924), complete cds P

EST sequences (14)

BY141753.1 Clone L930152A03 embryonic tissue 5' read P
BY141754.1 Clone L930152A05 embryonic tissue 5' read P
BX513316.1 Clone IMAGp998M173399_;_IMAGE:1347640 mammary gland
CJ238562.1 Clone L930152A05 embryonic tissue 3' read
AA544919.1 Clone IMAGE:949251 mammary gland 5' read
AA616128.1 Clone IMAGE:1066947 mammary gland 5' read
AA764509.1 Clone IMAGE:1067704 mammary gland 5' read
AA981621.1 Clone IMAGE:1347640 mammary gland 5' read
AW125201.1 Clone UI-M-BH2.1-aps-a-08-0-UI mixed 3' read A
AI596760.1 Clone IMAGE:949251 mammary gland 5' read
AV376830.2 Clone 9130217G22 intestine 3' read
BB230072.1 Clone A630024N13 thymus 3' read
BE865141.1 Clone UI-M-BH2.1-aps-a-08-0-UI mixed 5' read
BB625284.1 Clone 9130217G22 intestine 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help