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UGID:1066403     UniGene Mm.290116     Mus musculus (mouse)   BC004004
CDNA sequence BC004004 (BC004004)

Mouse protein-coding gene BC004004. Represented by 338 ESTs from 150 cDNA libraries. Corresponds to reference sequence NM_030561.3. [UniGene 1066403 - Mm.290116]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_085038.3 bombesin receptor-activated protein C6orf89 homolog M. musculus 100.0 347
NP_689947.2 C6orf89 gene product H. sapiens 89.3 353
Other hits (2 of 17) [Show all]SpeciesId(%)Len(aa)
NP_955411.1 RGD735065 gene product R. norvegicus 96.8 347
XP_003897587.1 PREDICTED: bombesin receptor-activated protein C6orf89 homolog isoform 1 P. anubis 90.1 353

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; embryonic tissue; lymph node; mammary gland; ovary; prostate; tongue; liver; extraembryonic tissue; pituitary gland; uterus; mixed; spleen; kidney; eye; pancreas; bone marrow; molar; thymus; lung; uncharacterized tissue; connective tissue; testis; intestine; heart; skin; bone; pineal gland; bladder; spinal cord; epididymis; salivary gland; stomach; joint; muscle; fertilized ovum; nasopharynx
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 17
Map position: 17|17 B1
UniSTS entry: Chr 17 BB357245
UniSTS entry: Chr 9 D1S3698
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (15)

AK030596.1 Mus musculus adult male pituitary gland cDNA, RIKEN full-length enriched library, clone:5330436F08 product:hypothetical protein, MGC:7550, full insert sequence P
AK081391.1 Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130013G17 product:unclassifiable, full insert sequence
BC058575.1 Mus musculus cDNA sequence BC004004, mRNA (cDNA clone MGC:68120 IMAGE:6488611), complete cds PA
AK217020.1 Mus musculus cDNA, clone:Y2G0140F23, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000064709, based on BLAT search P
AK214390.1 Mus musculus cDNA, clone:Y2G0131K01, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000064683, based on BLAT search
AK211240.1 Mus musculus cDNA, clone:Y2G0121B17, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000064709, based on BLAT search P
AK198839.1 Mus musculus cDNA, clone:Y1G0129F10, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000064709, based on BLAT search P
AK191458.1 Mus musculus cDNA, clone:Y1G0105P13, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000064709, based on BLAT search P
AK188602.1 Mus musculus cDNA, clone:Y0G0145N08, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000064709, based on BLAT search
AK180865.1 Mus musculus cDNA, clone:Y0G0116C16, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000064709, based on BLAT search P
AK180627.1 Mus musculus cDNA, clone:Y0G0115D09, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000064709, based on BLAT search P
AK151327.1 Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830028C04 product:hypothetical protein, full insert sequence P
AK157037.1 Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830113P20 product:hypothetical protein, full insert sequence P
NM_030561.3 Mus musculus cDNA sequence BC004004 (BC004004), mRNA P
BC004004.1 Mus musculus cDNA sequence BC004004, mRNA (cDNA clone MGC:7550 IMAGE:3492768), complete cds PA

EST sequences (10 of 338) [Show all sequences]

CA577764.1 Clone NIA:K0714A11_IMAGE:30074890 bone marrow 5' read
CA578654.1 Clone NIA:K0726H02_IMAGE:30076117 bone marrow 5' read
BY012824.1 Clone G730035A08 lung 5' read
BY039011.1 Clone I730009I05 spleen 5' read P
BY039736.1 Clone I730012H18 thymus 5' read
BY043171.1 Clone I730027H09 spleen 5' read P
BY043369.1 Clone I730028E10 spleen 5' read P
BY052709.1 Clone I730070P12 spleen 5' read
BY053838.1 Clone I730075E11 spleen 5' read P
BY055681.1 Clone I730083C07 spleen 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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