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UGID:264369     UniGene Mm.28721     Mus musculus (mouse)   Brd3
Bromodomain containing 3 (Brd3)

Mouse protein-coding gene Brd3. Represented by 536 ESTs from 206 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 264369 - Mm.28721]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001107046.1 bromodomain-containing protein 3 isoform 1 M. musculus 100.0 742
NP_001102045.1 bromodomain-containing protein 3 R. norvegicus 99.6 722
NP_031397.1 bromodomain-containing protein 3 H. sapiens 97.7 725
NP_001090595.1 bromodomain containing 3 X. laevis 88.6 781
NP_997867.1 brd3b gene product D. rerio 86.4 662
NP_727228.1 female sterile (1) homeotic, isoform A D. melanogaster 63.3 1109
Other hits (2 of 39) [Show all]SpeciesId(%)Len(aa)
XP_001170358.1 PREDICTED: bromodomain-containing protein 3 isoform 8 P. troglodytes 97.7 723
XP_858014.1 PREDICTED: bromodomain-containing protein 3 isoform 3 C. lupus familiaris 97.4 725

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; brain; mixed; testis; thymus; mammary gland; eye; lung; bone marrow; kidney; extraembryonic tissue; uncharacterized tissue; tongue; skin; pancreas; muscle; blood; intestine; sympathetic ganglion; bone; bladder; vagina; heart; ovary; connective tissue; fertilized ovum; lymph node; pituitary gland; spinal cord; oviduct; adrenal gland; salivary gland; liver; inner ear; stomach; dorsal root ganglion; nasopharynx
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2 A3|2
UniSTS entry: Chr 2 UniSTS:234347
UniSTS entry: Chr 2 RH133905
UniSTS entry: Chr 2 AW060456
UniSTS entry: D11S4285
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (33)

AK076472.1 Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4833419B10 product:bromodomain-containing 3, full insert sequence P
AK037435.1 Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130018N12 product:bromodomain-containing 3, full insert sequence P
AK080537.1 Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730079H24 product:bromodomain-containing 3, full insert sequence
AK079666.1 Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330104A13 product:bromodomain-containing 3, full insert sequence
AK078563.1 Mus musculus 11 days embryo gonad cDNA, RIKEN full-length enriched library, clone:7030403M22 product:bromodomain-containing 3, full insert sequence
AK076924.1 Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930557I15 product:bromodomain-containing 3, full insert sequence P
AK034797.1 Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430040A05 product:bromodomain-containing 3, full insert sequence
AK009979.1 Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310058G14 product:bromodomain-containing 3, full insert sequence P
AK218049.1 Mus musculus cDNA, clone:Y2G0143N10, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000071018, based on BLAT search
AK211759.1 Mus musculus cDNA, clone:Y2G0122M11, strand:unspecified
AK210005.1 Mus musculus cDNA, clone:Y2G0117A11, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000071018, based on BLAT search
AK208466.1 Mus musculus cDNA, clone:Y2G0111H09, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000071018, based on BLAT search
AK190838.1 Mus musculus cDNA, clone:Y1G0103P15, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000071018, based on BLAT search
AK184568.1 Mus musculus cDNA, clone:Y0G0130K23, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000071018, based on BLAT search P
AB206708.2 Mus musculus Orfx mRNA, complete cds P
AB212272.1 Mus musculus Orfx mRNA for open reading frame X, complete cds P
AY513269.1 Mus musculus endothelial differentiation inhibitory protein D18 mRNA, complete cds PA
AK142230.1 Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched library, clone:D330016E18 product:Warning: possibly reversed clone, full insert sequence PA
AK159827.1 Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420032E15 product:bromodomain containing 3, full insert sequence P
AK136429.1 Mus musculus adult male colon cDNA, RIKEN full-length enriched library, clone:9030024H11 product:bromodomain containing 3, full insert sequence P
AK167573.1 Mus musculus 13 days pregnant adult female placenta cDNA, RIKEN full-length enriched library, clone:I530023F02 product:bromodomain containing 3, full insert sequence P
AK136007.1 Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length enriched library, clone:7420445L02 product:bromodomain containing 3, full insert sequence P
AK161164.1 Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4831405E10 product:bromodomain containing 3, full insert sequence P
AK160752.1 Mus musculus 13 days embryo head cDNA, RIKEN full-length enriched library, clone:3110009N01 product:bromodomain containing 3, full insert sequence PA
AK165817.1 Mus musculus 14 days embryo lung cDNA, RIKEN full-length enriched library, clone:G630094J01 product:bromodomain containing 3, full insert sequence
NM_001113574.1 Mus musculus bromodomain containing 3 (Brd3), transcript variant 1, mRNA PA
NM_001113573.1 Mus musculus bromodomain containing 3 (Brd3), transcript variant 2, mRNA PA
AF269193.1 Mus musculus bromodomain-containing FSH-like protein FSRG2 (Fsrg2) mRNA, complete cds PA
AK014429.1 Mus musculus 18 days pregnant adult female placenta and extra embryonic tissue cDNA, RIKEN full-length enriched library, clone:3830408M13 product:bromodomain-containing 3, full insert sequence PA
AK010739.1 Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:2410084F24 product:bromodomain-containing 3, full insert sequence P
NM_023336.4 Mus musculus bromodomain containing 3 (Brd3), transcript variant 3, mRNA PA
BC004832.1 Mus musculus bromodomain containing 3, mRNA (cDNA clone IMAGE:2650994), partial cds PA
BC031536.1 Mus musculus bromodomain containing 3, mRNA (cDNA clone MGC:28328 IMAGE:4015879), complete cds PA

EST sequences (10 of 536) [Show all sequences]

CA571907.1 Clone NIA:K0526E05_IMAGE:30066388 bone marrow 5' read P
CA751756.1 Clone IMAGE:6830182 brain 5' read
BY003619.1 Clone E530115L19 brain 5' read P
BY005029.1 Clone E860107G07 embryonic tissue 5' read P
BY030661.1 Clone I0C0014D14 embryonic tissue 5' read P
BY062290.1 Clone I920022C16 kidney 5' read P
BY064265.1 Clone I920033I06 kidney 5' read P
BY064662.1 Clone I920036I05 stomach 5' read P
BY069156.1 Clone I920065D20 kidney 5' read P
BY062133.1 Clone I920021F11 mixed 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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