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UGID:887885     UniGene Mm.286285     Mus musculus (mouse)   Phf17
PHD finger protein 17 (Phf17)

Mouse protein-coding gene Phf17. Represented by 352 ESTs from 147 cDNA libraries. Corresponds to 4 reference sequences (different isoforms). [UniGene 887885 - Mm.286285]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001123656.1 Phf17 gene product M. musculus 100.0 833
NP_955352.1 PHF17 gene product H. sapiens 96.1 841
NP_001085440.1 protein Jade-1 X. laevis 78.0 826
NP_956099.1 phf17 gene product D. rerio 70.9 828
XP_956156.1 hypothetical protein NCU00045 N. crassa 49.0 253
NP_612007.2 rhinoceros, isoform C D. melanogaster 47.0 866
Other hits (2 of 38) [Show all]SpeciesId(%)Len(aa)
NP_001015559.1 PHF17 gene product B. taurus 98.2 508
NP_001101140.1 protein Jade-1 R. norvegicus 98.0 827

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; mixed; brain; extraembryonic tissue; liver; muscle; stomach; mammary gland; pancreas; bone marrow; bladder; uterus; spleen; lymph node; eye; thymus; kidney; testis; skin; uncharacterized tissue; lung; olfactory mucosa; heart; pituitary gland; vagina; spinal cord; ovary; adrenal gland; adipose tissue; salivary gland; intestine; connective tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 3
Map position: 3 B|3
UniSTS entry: Phf17
UniSTS entry: Phf17
UniSTS entry: Chr 3 AU041499
UniSTS entry: Chr 3 AW534015
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (17)

NM_172303.4 Mus musculus PHD finger protein 17 (Phf17), transcript variant 1, mRNA PA
AK049332.1 Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330024H24 product:hypothetical PHD-finger containing protein, full insert sequence P
AK040146.1 Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430069N05 product:unclassifiable, full insert sequence
AK037302.1 Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130004J02 product:unclassifiable, full insert sequence
AK021317.1 Mus musculus 13 days embryo stomach cDNA, RIKEN full-length enriched library, clone:D530048A03 product:unclassifiable, full insert sequence
AY357298.1 Mus musculus PHD zinc finger protein (Jade1) mRNA, partial cds
AK129445.1 Mus musculus mRNA for mKIAA1807 protein P
AK193278.1 Mus musculus cDNA, clone:Y1G0111K24, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000026865, based on BLAT search P
AK193039.1 Mus musculus cDNA, clone:Y1G0110M19, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000026865, based on BLAT search
AK147466.1 Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1048I08 product:PHD finger protein 17, full insert sequence P
AK166147.1 Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730046E15 product:PHD finger protein 17, full insert sequence
NM_001130186.1 Mus musculus PHD finger protein 17 (Phf17), transcript variant 4, mRNA PA
NM_001130185.1 Mus musculus PHD finger protein 17 (Phf17), transcript variant 3, mRNA PA
NM_001130184.1 Mus musculus PHD finger protein 17 (Phf17), transcript variant 2, mRNA PA
BC026471.1 Mus musculus PHD finger protein 17, mRNA (cDNA clone IMAGE:4487274), partial cds PA
BC020316.2 Mus musculus PHD finger protein 17, mRNA (cDNA clone MGC:31036 IMAGE:5250231), complete cds PA
BC038026.1 Mus musculus PHD finger protein 17, mRNA (cDNA clone IMAGE:3984250), partial cds PA

EST sequences (10 of 352) [Show all sequences]

CA568876.1 Clone NIA:K0434F04_IMAGE:30062367 bone marrow 5' read P
CA569082.1 Clone NIA:K0437F03_IMAGE:30062654 bone marrow 5' read P
CA570146.1 Clone NIA:K0502D10_IMAGE:30064077 bone marrow 5' read P
BY005949.1 Clone F430208O20 spleen 5' read
BY017873.1 Clone G830025D11 mammary gland 5' read
BY035209.1 Clone I530017L23 mixed 5' read P
BY036173.1 Clone I530022P05 extraembryonic tissue 5' read P
BY059751.1 Clone I920003F01 heart 5' read P
BY060282.1 Clone I920006K13 extraembryonic tissue 5' read P
BY088440.1 Clone K630070J16 embryonic tissue 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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