NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
Finding cDNAs

UGID:264044     UniGene Mm.28200     Mus musculus (mouse)   Slu7
SLU7 splicing factor homolog (S. cerevisiae) (Slu7)

Mouse protein-coding gene Slu7. Represented by 288 ESTs from 149 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 264044 - Mm.28200]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_683514.2 Slu7 gene product M. musculus 100.0 584
NP_006416.3 SLU7 gene product H. sapiens 98.8 585
NP_001007368.1 slu7 gene product D. rerio 86.9 558
NP_651659.2 Slu7 D. melanogaster 61.6 569
NP_564859.2 Pre-mRNA-splicing factor SLU7-A A. thaliana 54.9 525
XP_001693111.1 predicted protein C. reinhardtii 53.2 487
NP_505661.1 Protein K07C5.6 C. elegans 52.6 553
Other hits (2 of 52) [Show all]SpeciesId(%)Len(aa)
NP_001094020.1 Slu7 gene product R. norvegicus 99.5 585
XP_536446.2 PREDICTED: pre-mRNA-splicing factor SLU7 C. lupus familiaris 98.7 606

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; brain; eye; mammary gland; artery; ovary; skin; stomach; thymus; pituitary gland; mixed; uncharacterized tissue; spinal cord; blood; pancreas; extraembryonic tissue; intestine; testis; kidney; prostate; bone marrow; molar; thyroid; heart; lung; joint; bladder; dorsal root ganglion; bone; salivary gland; spleen; fertilized ovum; nasopharynx; liver
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 11
Map position: 11 A5-B1.1|11
UniSTS entry: D3Bwg0878e
UniSTS entry: Chr 11 D11Ertd730e
UniSTS entry: Chr 11 RH136514
UniSTS entry: Chr 11 BB260036
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (12)

AK049178.1 Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330011H09 product:STEP II SPLICING FACTOR SLU7 homolog [Homo sapiens], full insert sequence P
AK047597.1 Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930096L20 product:DNA segment, Chr 3, Brigham and Women's Genetics 0878 expressed, full insert sequence P
AK046262.1 Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230362M05 product:STEP II SPLICING FACTOR SLU7 homolog [Homo sapiens], full insert sequence P
AK029117.1 Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732493P06 product:STEP II SPLICING FACTOR SLU7 homolog [Homo sapiens], full insert sequence P
BC060954.1 Mus musculus SLU7 splicing factor homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:30297536), partial cds PA
NM_198936.1 Mus musculus SLU7 splicing factor homolog (S. cerevisiae) (Slu7), transcript variant 2, mRNA P
BC082780.1 Mus musculus SLU7 splicing factor homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:5043863), partial cds PA
BC106099.1 Mus musculus SLU7 splicing factor homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:4458934), partial cds PA
BC013810.1 Mus musculus SLU7 splicing factor homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:3602931), partial cds PA
BC023057.1 Mus musculus SLU7 splicing factor homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:5355704), partial cds PA
BC025870.1 Mus musculus SLU7 splicing factor homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:5010821), complete cds PA
NM_148673.3 Mus musculus SLU7 splicing factor homolog (S. cerevisiae) (Slu7), transcript variant 1, mRNA P

EST sequences (10 of 288) [Show all sequences]

CA572359.1 Clone NIA:K0533G03_IMAGE:30067082 bone marrow 5' read
CA574542.1 Clone NIA:K0617G03_IMAGE:30070442 bone marrow 5' read P
BY038079.1 Clone I730003O12 thymus 5' read P
BY080543.1 Clone K630025O08 extraembryonic tissue 5' read P
BY081269.1 Clone K630031C24 mixed 5' read P
BY243619.1 Clone K230044A15 brain 5' read P
BY267986.1 Clone K430020J04 brain 5' read P
BY291437.1 Clone K530308C07 brain 5' read P
BY296245.1 Clone K530342M01 brain 5' read P
BY301628.1 Clone K720015M04 embryonic tissue 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help