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UGID:632291     UniGene Mm.270278     Mus musculus (mouse)   Tef
Thyrotroph embryonic factor (Tef)

Mouse protein-coding gene Tef. Represented by 437 ESTs from 151 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 632291 - Mm.270278]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_059072.1 thyrotroph embryonic factor isoform 1 M. musculus 100.0 300
NP_062067.2 Tef gene product R. norvegicus 99.7 300
NP_003207.1 TEF gene product H. sapiens 98.7 302
NP_001080248.1 D site of albumin promoter (albumin D-box) binding protein X. laevis 76.5 267
NP_571475.1 tefa gene product D. rerio 69.5 297
NP_729297.1 PAR-domain protein 1, isoform F D. melanogaster 52.7 237
Other hits (2 of 33) [Show all]SpeciesId(%)Len(aa)
NP_001253181.1 thyrotrophic embryonic factor M. mulatta 98.7 302
XP_003905650.1 PREDICTED: thyrotroph embryonic factor P. anubis 98.7 302

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; mammary gland; kidney; embryonic tissue; skin; mixed; eye; liver; inner ear; bone marrow; sympathetic ganglion; lung; uncharacterized tissue; tongue; intestine; pancreas; extraembryonic tissue; thyroid; muscle; thymus; bone; spleen; pineal gland; spinal cord; testis; heart; bladder; ovary; oviduct; salivary gland; connective tissue; nasopharynx; joint; stomach
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 15
Map position: 15 E1|15 38.25 cM
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (58)

AK075601.1 Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:0610040C15 product:thyrotroph embryonic factor, full insert sequence P
AK085437.1 Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched library, clone:D630024P09 product:unclassifiable, full insert sequence
AK027965.1 Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110038L23 product:unclassifiable, full insert sequence
AK010205.1 Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310076L22 product:unclassifiable, full insert sequence
AY540632.1 Mus musculus thyrotroph embryonic factor beta isoform (Tef) mRNA, complete cds, alternatively spliced P
AY540631.1 Mus musculus thyrotroph embryonic factor alpha isoform (Tef) mRNA, complete cds, alternatively spliced P
AK220090.1 Mus musculus cDNA, clone:Y2G0150M05, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK219791.1 Mus musculus cDNA, clone:Y2G0149K10, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000052561, based on BLAT search P
AK218890.1 Mus musculus cDNA, clone:Y2G0146K18, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK214482.1 Mus musculus cDNA, clone:Y2G0131O15, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000052561, based on BLAT search P
AK213649.1 Mus musculus cDNA, clone:Y2G0128P19, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK212664.1 Mus musculus cDNA, clone:Y2G0125L12, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK208083.1 Mus musculus cDNA, clone:Y2G0110A21, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK206358.1 Mus musculus cDNA, clone:Y2G0104J17, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK204293.1 Mus musculus cDNA, clone:Y1G0147O05, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK203344.1 Mus musculus cDNA, clone:Y1G0144J08, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK201843.1 Mus musculus cDNA, clone:Y1G0139I16, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK201009.1 Mus musculus cDNA, clone:Y1G0136L06, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK200861.1 Mus musculus cDNA, clone:Y1G0136D14, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK200544.1 Mus musculus cDNA, clone:Y1G0134O07, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000052561, based on BLAT search P
AK198445.1 Mus musculus cDNA, clone:Y1G0128D09, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK197901.1 Mus musculus cDNA, clone:Y1G0126I05, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000052561, based on BLAT search P
AK197883.1 Mus musculus cDNA, clone:Y1G0126H10, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK197787.1 Mus musculus cDNA, clone:Y1G0126C15, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK196541.1 Mus musculus cDNA, clone:Y1G0122C13, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000052561, based on BLAT search P
AK196220.1 Mus musculus cDNA, clone:Y1G0121C22, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK195890.1 Mus musculus cDNA, clone:Y1G0119P13, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK195383.1 Mus musculus cDNA, clone:Y1G0118F06, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK195205.1 Mus musculus cDNA, clone:Y1G0117L11, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK194136.1 Mus musculus cDNA, clone:Y1G0114G15, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK193624.1 Mus musculus cDNA, clone:Y1G0112O03, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK193431.1 Mus musculus cDNA, clone:Y1G0112E09, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000052561, based on BLAT search P
AK193065.1 Mus musculus cDNA, clone:Y1G0110O08, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK192693.1 Mus musculus cDNA, clone:Y1G0109K11, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK190263.1 Mus musculus cDNA, clone:Y1G0102D20, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000052561, based on BLAT search
AK189926.1 Mus musculus cDNA, clone:Y1G0101D12, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK189278.1 Mus musculus cDNA, clone:Y0G0148I15, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000052561, based on BLAT search P
AK187631.1 Mus musculus cDNA, clone:Y0G0142I07, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000052561, based on BLAT search
AK185648.1 Mus musculus cDNA, clone:Y0G0134M12, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000052561, based on BLAT search P
AK185529.1 Mus musculus cDNA, clone:Y0G0134G03, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000052561, based on BLAT search P
AK183503.1 Mus musculus cDNA, clone:Y0G0126C23, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK181094.1 Mus musculus cDNA, clone:Y0G0116O16, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000052561, based on BLAT search P
AK178639.1 Mus musculus cDNA, clone:Y0G0107G22, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK177827.1 Mus musculus cDNA, clone:Y0G0104G15, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000052561, based on BLAT search P
AK177695.1 Mus musculus cDNA, clone:Y0G0103M13, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK177522.1 Mus musculus cDNA, clone:Y0G0103A12, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023024, based on BLAT search
AK145125.1 Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length enriched library, clone:G830048K05 product:thyrotroph embryonic factor, full insert sequence P
AK141606.1 Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:C630043H05 product:thyrotroph embryonic factor, full insert sequence P
AK042146.1 Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630063M24 product:thyrotroph embryonic factor, full insert sequence P
AK147965.1 Mus musculus melanocyte cDNA, RIKEN full-length enriched library, clone:G270119N11 product:thyrotroph embryonic factor, full insert sequence P
AK154472.1 Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630037E11 product:thyrotroph embryonic factor, full insert sequence P
NM_017376.3 Mus musculus thyrotroph embryonic factor (Tef), transcript variant 1, mRNA PA
AF194420.1 Mus musculus thyrotroph embryonic factor (Tef) mRNA, complete cds P
AK009518.1 Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310028D20 product:unclassifiable, full insert sequence
BC017689.1 Mus musculus thyrotroph embryonic factor, mRNA (cDNA clone MGC:19233 IMAGE:4242534), complete cds PA
BC023410.1 Mus musculus thyrotroph embryonic factor, mRNA (cDNA clone IMAGE:5054763), partial cds A
BC036982.1 Mus musculus thyrotroph embryonic factor, mRNA (cDNA clone MGC:46858 IMAGE:4976241), complete cds PA
NM_153484.3 Mus musculus thyrotroph embryonic factor (Tef), transcript variant 2, mRNA PA

EST sequences (10 of 437) [Show all sequences]

BY001527.1 Clone 2124003A15 mixed 5' read
BY005810.1 Clone F430109N03 spleen 5' read P
BY006405.1 Clone F530002C22 kidney 5' read
BY015987.1 Clone G830015D23 mammary gland 5' read P
BY027438.1 Clone G930043M04 mammary gland 5' read P
BY027662.1 Clone G930045B20 mammary gland 5' read P
BY070586.1 Clone I920073K04 extraembryonic tissue 5' read
BY084371.1 Clone K630048A11 kidney 5' read P
BY088878.1 Clone K630072G23 mixed 5' read
BY090715.1 Clone K630082J09 mixed 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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