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UGID:539376     UniGene Mm.261842     Mus musculus (mouse)   4931406C07Rik
RIKEN cDNA 4931406C07 gene (4931406C07Rik)

Mouse protein-coding gene 4931406C07Rik. Represented by 361 ESTs from 120 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 539376 - Mm.261842]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_598493.1 ester hydrolase C11orf54 homolog M. musculus 100.0 314
NP_054758.2 ester hydrolase C11orf54 H. sapiens 90.9 264
NP_001086047.1 ester hydrolase C11orf54 homolog X. laevis 71.9 312
NP_997781.1 zgc:85789 gene product D. rerio 67.8 310
NP_612081.1 CG9119 D. melanogaster 52.0 316
NP_505382.2 Protein C24B5.4 C. elegans 48.6 292
Other hits (2 of 39) [Show all]SpeciesId(%)Len(aa)
NP_001014228.1 RGD1309534 gene product R. norvegicus 96.2 314
XP_001087199.1 PREDICTED: ester hydrolase C11orf54 isoform 6 M. mulatta 90.5 314

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: mammary gland; kidney; embryonic tissue; brain; lung; skin; mixed; testis; bone marrow; eye; uncharacterized tissue; ovary; thymus; liver; pancreas; spleen; spinal cord; extraembryonic tissue; intestine; bladder; inner ear; dorsal root ganglion; heart; thyroid; salivary gland; fertilized ovum; blood
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 9
Map position: 9|9 A3
UniSTS entry: Chr 9 D9Mit34.1 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (16)

AK088123.1 Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430004J10 product:PTD012 homolog [Homo sapiens], full insert sequence P
AK086514.1 Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930033J15 product:unclassifiable, full insert sequence
BC025213.1 Mus musculus RIKEN cDNA 4931406C07 gene, mRNA (cDNA clone IMAGE:5028886) PA
CT010296.1 Mus musculus full open reading frame cDNA clone RZPDo836A0952D for gene 4931406C07Rik, RIKEN cDNA 4931406C07 gene; complete cds, incl. stopcodon P
AK133768.1 Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730410J04 product:hypothetical protein, full insert sequence
AK165437.1 Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:F530001E24 product:unclassifiable, full insert sequence
AK133192.1 Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932410A13 product:Hypothetical protein (PTD012 homolog), full insert sequence P
AK157935.1 Mus musculus adult inner ear cDNA, RIKEN full-length enriched library, clone:F930010E24 product:hypothetical protein, full insert sequence
AK135434.1 Mus musculus 12 days embryo female mullerian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6820420K02 product:hypothetical protein, full insert sequence
AK147073.1 Mus musculus 17 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920097C18 product:Hypothetical protein (PTD012 homolog), full insert sequence P
NM_001199485.1 Mus musculus RIKEN cDNA 4931406C07 gene (4931406C07Rik), transcript variant 2, mRNA PA
NM_001199484.1 Mus musculus RIKEN cDNA 4931406C07 gene (4931406C07Rik), transcript variant 1, mRNA PA
AK016432.1 Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4931406C07 product:similar to PTD012 [Homo sapiens], full insert sequence P
BC011540.1 Mus musculus RIKEN cDNA 4931406C07 gene, mRNA (cDNA clone MGC:6803 IMAGE:2648220), complete cds PA
BC016078.1 Mus musculus RIKEN cDNA 4931406C07 gene, mRNA (cDNA clone MGC:27581 IMAGE:4489072), complete cds PA
NM_133732.3 Mus musculus RIKEN cDNA 4931406C07 gene (4931406C07Rik), transcript variant 3, mRNA PA

EST sequences (10 of 361) [Show all sequences]

BY003933.1 Clone E530118I12 brain 5' read
BY081848.1 Clone K630035C17 mixed 5' read P
BY137498.1 Clone L930093P15 embryonic tissue 5' read P
BY138507.1 Clone L930107D21 embryonic tissue 5' read
BY143627.1 Clone L930178N22 embryonic tissue 5' read
BY143672.1 Clone L930179H12 embryonic tissue 5' read
BY149974.1 Clone L930271F10 embryonic tissue 5' read P
BY304761.1 Clone K920001J16 embryonic tissue 5' read P
BY369381.1 Clone F520012H18 kidney 3' read A
BY369516.1 Clone F530001E24 kidney 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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