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UGID:537908     UniGene Mm.260374     Mus musculus (mouse)   Sema5a
Sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A (Sema5a)

Mouse protein-coding gene Sema5a. Represented by 168 ESTs from 93 cDNA libraries. Corresponds to reference sequence NM_009154.2. [UniGene 537908 - Mm.260374]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_033180.2 Sema5a gene product M. musculus 100.0 1073
NP_003957.2 SEMA5A gene product H. sapiens 96.0 1073
XP_001922573.2 PREDICTED: semaphorin-5A D. rerio 84.1 980
NP_001079991.1 sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B precursor X. laevis 63.8 1066
Other hits (2 of 24) [Show all]SpeciesId(%)Len(aa)
NP_001101129.1 Sema5a gene product R. norvegicus 98.9 1073
XP_001083962.1 PREDICTED: semaphorin-5A isoform 1 M. mulatta 96.4 1073

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; brain; mixed; spleen; ovary; eye; extraembryonic tissue; kidney; intestine; bladder; other; prostate; tongue; muscle; testis; uncharacterized tissue; pancreas; epididymis; lung; bone marrow; skin; thymus; oviduct; dorsal root ganglion; fertilized ovum
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 15
Map position: 15 B3.1|15 13.02 cM
UniSTS entry: Chr 15 AI464145
UniSTS entry: Sema5a
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (10)

AK039101.1 Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230096C01 product:SEMAPHORIN 5A PRECURSOR (SEMAPHORIN F) (SEMA F) [Mus musculus], full insert sequence P
AK087203.1 Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030034A11 product:unclassifiable, full insert sequence
AK083691.1 Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030067L23 product:unclassifiable, full insert sequence
AK033613.1 Mus musculus adult male cecum cDNA, RIKEN full-length enriched library, clone:9130201M22 product:unclassifiable, full insert sequence
BC065137.1 Mus musculus sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A, mRNA (cDNA clone MGC:86170 IMAGE:30548165), complete cds PA
AK143026.1 Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030043B19 product:sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A, full inser ... P
AK141612.1 Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:C630044E17 product:sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A, full i ... P
AK157706.1 Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130002N16 product:sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A ... P
AK165206.1 Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched library, clone:F420002I21 product:sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A, full in ... P
NM_009154.2 Mus musculus sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A (Sema5a), mRNA P

EST sequences (10 of 168) [Show all sequences]

CA567265.1 Clone NIA:K0412A07_IMAGE:30060198 bone marrow 5' read
CA567465.1 Clone NIA:K0414E08_IMAGE:30060439 bone marrow 5' read
BY138598.1 Clone L930108G20 embryonic tissue 5' read
BY139752.1 Clone L930125B11 embryonic tissue 5' read
BY144778.1 Clone L930193P07 embryonic tissue 5' read
BY146273.1 Clone L930217O19 embryonic tissue 5' read P
BY216453.1 Clone F830044N14 spleen 5' read
BY221921.1 Clone F830224K09 spleen 5' read
BY261440.1 Clone K330307A13 brain 5' read
BY562393.1 Clone F830044N14 spleen 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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