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UGID:335163     UniGene Mm.248517     Mus musculus (mouse)   Taf6
TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor (Taf6)

Mouse protein-coding gene Taf6. Represented by 109 ESTs from 65 cDNA libraries. Corresponds to reference sequence NM_009315.3. [UniGene 335163 - Mm.248517]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_033341.1 transcription initiation factor TFIID subunit 6 M. musculus 100.0 677
NP_647476.1 transcription initiation factor TFIID subunit 6 isoform alpha H. sapiens 99.1 676
NP_001081232.1 transcription initiation factor TFIID subunit 6 X. laevis 85.9 617
NP_001004557.1 taf6 gene product D. rerio 82.5 635
NP_524161.2 TBP-associated factor 6, isoform A D. melanogaster 59.6 599
Other hits (2 of 33) [Show all]SpeciesId(%)Len(aa)
XP_003895820.1 PREDICTED: transcription initiation factor TFIID subunit 6 isoform 1 P. anubis 99.4 677
XP_546964.2 PREDICTED: transcription initiation factor TFIID subunit 6 isoform 1 C. lupus familiaris 99.4 677

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; eye; thymus; inner ear; intestine; lung; testis; mammary gland; brain; mixed; uncharacterized tissue; skin; spleen; pituitary gland; bladder; extraembryonic tissue; liver; pancreas; spinal cord; salivary gland; kidney; ovary
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 5
Map position: 5 G2|5
UniSTS entry: Chr 5 RH137179
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (15)

BC058583.1 Mus musculus TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, mRNA (cDNA clone MGC:65302 IMAGE:6514960), complete cds PA
AK216752.1 Mus musculus cDNA, clone:Y2G0139G06, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000048698, based on BLAT search P
AK214579.1 Mus musculus cDNA, clone:Y2G0132D21, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000048698, based on BLAT search P
AK213626.1 Mus musculus cDNA, clone:Y2G0128O13, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000048698, based on BLAT search P
AK208182.1 Mus musculus cDNA, clone:Y2G0110F24, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000048698, based on BLAT search
AK207383.1 Mus musculus cDNA, clone:Y2G0107N09, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000048698, based on BLAT search P
AK204792.1 Mus musculus cDNA, clone:Y1G0149K06, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000048698, based on BLAT search P
AK189374.1 Mus musculus cDNA, clone:Y0G0148P04, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000048698, based on BLAT search P
AK188067.1 Mus musculus cDNA, clone:Y0G0143P16, strand:unspecified
AK185698.1 Mus musculus cDNA, clone:Y0G0134O21, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000048698, based on BLAT search P
AK178191.1 Mus musculus cDNA, clone:Y0G0105M06, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000048698, based on BLAT search
AK154867.1 Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630110A21 product:TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, full insert sequence P
AK153731.1 Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630064K15 product:Warning: possibly chimeric clone, full insert sequence P
D49439.1 Mus musculus mRNA for TFIID subunit p80, complete cds P
NM_009315.3 Mus musculus TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor (Taf6), mRNA P

EST sequences (10 of 109) [Show all sequences]

BY020883.1 Clone G830043N05 mammary gland 5' read P
BY085156.1 Clone K630051H23 liver 5' read P
BY180455.1 Clone F630040G23 uncharacterized tissue 5' read P
BY183727.1 Clone F630110A21 uncharacterized tissue 5' read P
BY190602.1 Clone F630313L13 uncharacterized tissue 5' read P
BY200504.1 Clone F730049M24 skin 5' read P
BY203005.1 Clone F730116F20 skin 5' read P
BY222847.1 Clone F830230E03 spleen 5' read
BY235826.1 Clone F930043N06 inner ear 5' read
BY271037.1 Clone K430043G01 brain 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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