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UGID:332785     UniGene Mm.245931     Mus musculus (mouse)   H2afx
H2A histone family, member X (H2afx)

Mouse protein-coding gene H2afx. Represented by 234 ESTs from 92 cDNA libraries. Corresponds to reference sequence NM_010436.2. [UniGene 332785 - Mm.245931]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_034566.1 H2afx gene product M. musculus 100.0 142
NP_001102761.1 H2A histone family, member X R. norvegicus 100.0 142
XP_001102040.1 PREDICTED: histone H2A.x-like isoform 2 M. mulatta 100.0 142
XP_003910863.1 PREDICTED: histone H2A.x-like P. anubis 100.0 142
NP_002096.1 H2AFX gene product H. sapiens 100.0 142
XP_853256.2 PREDICTED: histone H2A.x-like C. lupus familiaris 100.0 142
XP_003129998.2 PREDICTED: histone H2A.x-like S. scrofa 100.0 142
NP_001073248.1 histone H2A.x B. taurus 100.0 142
XP_004016142.1 PREDICTED: histone H2A.x-like isoform 1 O. aries 100.0 142
XP_002722755.1 PREDICTED: H2A histone family, member X-like isoform 1 O. cuniculus 100.0 142
NP_957367.1 h2afx gene product D. rerio 96.5 141
NP_724343.1 histone H2A D. melanogaster 93.3 120
NP_001086099.1 histone H2A.x X. laevis 92.8 138
XP_959442.1 histone H2A N. crassa 90.3 133
NP_505463.1 Protein HIS-35 C. elegans 90.2 123
NP_010511.3 Hta1p S. cerevisiae 85.2 128
XP_001690809.1 histone H2A C. reinhardtii 82.2 128
NP_200275.1 histone H2A A. thaliana 81.6 125
Other hits (2 of 57) [Show all]SpeciesId(%)Len(aa)
XP_001370540.1 PREDICTED: histone H2A.x M. domestica 99.3 144
XP_001512371.1 PREDICTED: histone H2A.x-like O. anatinus 99.3 141

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; brain; mammary gland; mixed; thymus; eye; intestine; testis; uncharacterized tissue; pancreas; stomach; lung; ovary; liver; bone; salivary gland; spleen; heart; sympathetic ganglion
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 9
Map position: 9 A5.2|9 24.84 cM
UniSTS entry: Chr 9 AW228881
UniSTS entry: H2AFX
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

AK088040.1 Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430002L09 product:H2A histone family, member X, full insert sequence P
AK008124.1 Mus musculus adult male small intestine cDNA, RIKEN full-length enriched library, clone:2010005I09 product:H2A histone family, member X, full insert sequence P
AK217455.1 Mus musculus cDNA, clone:Y2G0141N13, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000052686, based on BLAT search
AK205446.1 Mus musculus cDNA, clone:Y2G0101L08, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000052686, based on BLAT search
AK178839.1 Mus musculus cDNA, clone:Y0G0108B10, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000052686, based on BLAT search
X58069.1 Mouse mRNA for Histone H2A.X P
NM_010436.2 Mus musculus H2A histone family, member X (H2afx), mRNA PA
BC005468.1 Mus musculus H2A histone family, member X, mRNA (cDNA clone MGC:6616 IMAGE:3490058), complete cds PA
BC010336.1 Mus musculus H2A histone family, member X, mRNA (cDNA clone MGC:11561 IMAGE:3156946), complete cds PA

EST sequences (10 of 234) [Show all sequences]

BY039080.1 Clone I730009M08 mixed 5' read P
BY042067.1 Clone I730022J11 mixed 5' read P
BY045326.1 Clone I730037E07 mixed 5' read P
BY055373.1 Clone I730081P11 mixed 5' read P
BY057122.1 Clone I730091E22 mixed 5' read P
BY057277.1 Clone I730091O08 thymus 5' read
BY067227.1 Clone I920053E06 mixed 5' read P
BY072771.1 Clone I920086D22 mixed 5' read P
BY090331.1 Clone K630080O12 mixed 5' read P
BY094856.1 Clone K630102M15 mixed 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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