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UGID:261081     UniGene Mm.22453     Mus musculus (mouse)   Tardbp
TAR DNA binding protein (Tardbp)

Mouse protein-coding gene Tardbp. Represented by 1105 ESTs from 279 cDNA libraries. Corresponds to 6 reference sequences (different isoforms). [UniGene 261081 - Mm.22453]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_663531.1 Tardbp gene product M. musculus 100.0 413
NP_001011979.1 Tardbp gene product R. norvegicus 100.0 284
NP_031401.1 TARDBP gene product H. sapiens 98.3 413
NP_001080637.1 TAR DNA binding protein X. laevis 94.2 241
NP_958884.1 tardbp gene product D. rerio 82.6 408
NP_477399.1 TAR DNA-binding protein-43 homolog, isoform A D. melanogaster 61.4 326
Other hits (2 of 33) [Show all]SpeciesId(%)Len(aa)
XP_001364432.1 PREDICTED: TAR DNA-binding protein 43-like isoform 2 M. domestica 99.3 303
NP_001039950.2 TARDBP gene product B. taurus 99.3 413

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; brain; mammary gland; eye; mixed; thymus; pancreas; testis; extraembryonic tissue; skin; uncharacterized tissue; fertilized ovum; kidney; bone; lung; bone marrow; intestine; ovary; stomach; liver; heart; prostate; sympathetic ganglion; spinal cord; dorsal root ganglion; spleen; inner ear; salivary gland; molar; uterus; tongue; pituitary gland; connective tissue; blood; epididymis; nasopharynx; lymph node; thyroid; muscle
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 4
Map position: 4 E2|4
UniSTS entry: Chr 4 HSC11D022
UniSTS entry: Chr 4 Tardbp
UniSTS entry: Chr 4 Tardbp
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (34)

AK083312.1 Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:C920003J06 product:TAR DNA-BINDING PROTEIN-43 homolog [Homo sapiens], full insert sequence P
AK045495.1 Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230207D04 product:TAR DNA BINDING PROTEIN homolog [Homo sapiens], full insert sequence P
AK032199.1 Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430411L08 product:TAR DNA-BINDING PROTEIN-43 homolog [Homo sapiens], full insert sequence P
AK076208.1 Mus musculus 18 days pregnant adult female placenta and extra embryonic tissue cDNA, RIKEN full-length enriched library, clone:3830612P03 product:TAR DNA BINDING PROTEIN homolog [Homo sapiens], full insert sequence P
BC029728.1 Mus musculus TAR DNA binding protein, mRNA (cDNA clone MGC:36334 IMAGE:4950263), complete cds PA
AY319516.1 Mus musculus TARDBP S9 (TARDBP) mRNA, complete cds, alternative transcript P
AY319515.1 Mus musculus TARDBP S8 (TARDBP) mRNA, complete cds, alternative transcript P
AY319514.1 Mus musculus TARDBP S7 (TARDBP) mRNA, complete cds, alternative transcript P
AY319513.1 Mus musculus TARDBP S6 (TARDBP) mRNA, complete cds, alternative transcript P
AK213969.1 Mus musculus cDNA, clone:Y2G0130C11, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000055827, based on BLAT search
AK211942.1 Mus musculus cDNA, clone:Y2G0123F18, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000055827, based on BLAT search
AK195880.1 Mus musculus cDNA, clone:Y1G0119P03, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000055827, based on BLAT search P
AK194463.1 Mus musculus cDNA, clone:Y1G0115G15, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000055827, based on BLAT search P
NM_001003898.3 Mus musculus TAR DNA binding protein (Tardbp), transcript variant 6, mRNA P
NM_001008546.2 Mus musculus TAR DNA binding protein (Tardbp), transcript variant 4, mRNA P
NM_001003899.2 Mus musculus TAR DNA binding protein (Tardbp), transcript variant 3, mRNA P
NM_001008545.2 Mus musculus TAR DNA binding protein (Tardbp), transcript variant 2, mRNA P
AK133207.1 Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932416M19 product:TAR DNA binding protein, full insert sequence P
AK146002.1 Mus musculus 12 days pregnant adult female placenta cDNA, RIKEN full-length enriched library, clone:I530023H01 product:TAR DNA binding protein, full insert sequence P
AK146997.1 Mus musculus 16 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920085F16 product:TAR DNA binding protein, full insert sequence P
AK153803.1 Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630098I22 product:TAR DNA binding protein, full insert sequence P
GQ428777.1 Mus musculus strain Swiss Albino TDP-43 variant 3 mRNA, complete cds P
GQ428776.1 Mus musculus strain Swiss Albino TDP-43 variant 5 mRNA, complete cds P
GQ428775.1 Mus musculus strain Swiss Albino TDP-43 variant 1 mRNA, complete cds P
GU250735.1 Mus musculus strain Swiss Albino TDP-43 variant 2 mRNA, complete cds P
NR_027864.1 Mus musculus TAR DNA binding protein (Tardbp), transcript variant 5, non-coding RNA P
AK004440.1 Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1190002A23 product:unclassifiable, full insert sequence
BC012873.1 Mus musculus TAR DNA binding protein, mRNA (cDNA clone MGC:19284 IMAGE:4016437), complete cds PA
BC027105.1 Mus musculus TAR DNA binding protein, mRNA (cDNA clone MGC:36467 IMAGE:5359082), complete cds PA
BC025544.1 Mus musculus TAR DNA binding protein, mRNA (cDNA clone MGC:36405 IMAGE:5321007), complete cds PA
BC027772.1 Mus musculus TAR DNA binding protein, mRNA (cDNA clone MGC:36432 IMAGE:5346061), complete cds PA
BC031126.1 Mus musculus TAR DNA binding protein, mRNA (cDNA clone MGC:36366 IMAGE:4977114), complete cds PA
NM_145556.4 Mus musculus TAR DNA binding protein (Tardbp), transcript variant 1, mRNA P
BC033475.1 Mus musculus TAR DNA binding protein, mRNA (cDNA clone MGC:36341 IMAGE:4953334), complete cds PA

EST sequences (10 of 1105) [Show all sequences]

CA563640.1 Clone NIA:K0316C05_IMAGE:30055804 bone 5' read
CA564429.1 Clone NIA:K0326B01_IMAGE:30056748 bone 5' read P
CA565492.1 Clone NIA:K0338G04_IMAGE:30057963 bone 5' read P
CA567058.1 Clone NIA:K0409C12_IMAGE:30059939 bone marrow 5' read P
CA567099.1 Clone NIA:K0409G08_IMAGE:30059983 bone marrow 5' read P
CA568689.1 Clone NIA:K0431G02_IMAGE:30062089 bone marrow 5' read P
BY017741.1 Clone G830024E12 mammary gland 5' read P
BY032503.1 Clone I1C0013K11 embryonic tissue 5' read
BY035680.1 Clone I530020G14 mixed 5' read P
BY045325.1 Clone I730037E06 thymus 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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