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UGID:260956     UniGene Mm.22116     Mus musculus (mouse)   Pafah2
Platelet-activating factor acetylhydrolase 2 (Pafah2)

Mouse protein-coding gene Pafah2. Represented by 193 ESTs from 76 cDNA libraries. Corresponds to reference sequence NM_133880.2. [UniGene 260956 - Mm.22116]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_598641.2 platelet-activating factor acetylhydrolase 2, cytoplasmic M. musculus 100.0 389
NP_000428.2 PAFAH2 gene product H. sapiens 82.4 391
NP_001085584.2 platelet-activating factor acetylhydrolase 2, cytoplasmic X. laevis 51.9 378
NP_998354.1 pla2g7 gene product D. rerio 48.6 393
Other hits (2 of 20) [Show all]SpeciesId(%)Len(aa)
NP_808793.1 Pafah2 gene product R. norvegicus 93.6 389
XP_003891419.1 PREDICTED: platelet-activating factor acetylhydrolase 2, cytoplasmic isoform 1 P. anubis 82.9 391

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: mammary gland; embryonic tissue; kidney; liver; inner ear; lung; brain; extraembryonic tissue; eye; spleen; tongue; uncharacterized tissue; bone marrow; muscle; mixed; skin; thyroid; thymus; bladder; bone; dorsal root ganglion; joint; heart; spinal cord; nasopharynx
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 4
Map position: 4 D3|4
UniSTS entry: Chr 4 AI507170
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (12)

AK075918.1 Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310074E22 product:unclassifiable, full insert sequence P
AK205204.1 Mus musculus cDNA, clone:Y1G0150P11, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000039233, based on BLAT search P
AK187928.1 Mus musculus cDNA, clone:Y0G0143I04, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000039233, based on BLAT search
AK185621.1 Mus musculus cDNA, clone:Y0G0134K23, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000039233, based on BLAT search
AK181929.1 Mus musculus cDNA, clone:Y0G0120C06, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000039233, based on BLAT search P
AK145092.1 Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length enriched library, clone:G830040O03 product:Similar to platelet-activating factor acetylhydrolase 2 (40 kDa) (Expressed sequence AI507170) homolog [Mus musculus], full insert sequence P
AK144090.1 Mus musculus RCB-0545 OHTA cDNA, RIKEN full-length enriched library, clone:G430001P20 product:Similar to platelet-activating factor acetylhydrolase 2 (40 kDa) (Expressed sequence AI507170), full insert sequence P
AK156774.1 Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830048O09 product:Similar to platelet-activating factor acetylhydrolase 2 (40 kDa) (Expressed sequence AI507170), full insert sequence P
BC021890.1 Mus musculus platelet-activating factor acetylhydrolase 2, mRNA (cDNA clone MGC:11645 IMAGE:3598000), complete cds PA
BC025938.1 Mus musculus platelet-activating factor acetylhydrolase 2, mRNA (cDNA clone IMAGE:5099032), partial cds PA
NM_133880.2 Mus musculus platelet-activating factor acetylhydrolase 2 (Pafah2), mRNA PA
BC025495.1 Mus musculus platelet-activating factor acetylhydrolase 2, mRNA (cDNA clone MGC:38105 IMAGE:5310200), complete cds PA

EST sequences (10 of 193) [Show all sequences]

BY011834.1 Clone G730029D24 lung 5' read P
BY012570.1 Clone G730033M12 lung 5' read P
BY014993.1 Clone G730049A19 lung 5' read P
BY015052.1 Clone G730049E08 lung 5' read P
BY017145.1 Clone G830020L23 mammary gland 5' read P
BY018295.1 Clone G830027K02 mammary gland 5' read P
BY018469.1 Clone G830028I12 mammary gland 5' read P
BY018516.1 Clone G830028L17 mammary gland 5' read P
BY020263.1 Clone G830040J17 mammary gland 5' read P
BY020778.1 Clone G830043F19 mammary gland 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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