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UGID:260918     UniGene Mm.21961     Mus musculus (mouse)   Atp6ap1
ATPase, H+ transporting, lysosomal accessory protein 1 (Atp6ap1)

Mouse protein-coding gene Atp6ap1. Represented by 864 ESTs from 240 cDNA libraries. Corresponds to reference sequence NM_018794.4. [UniGene 260918 - Mm.21961]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_061264.1 V-type proton ATPase subunit S1 precursor M. musculus 100.0 462
NP_001174.2 V-type proton ATPase subunit S1 precursor H. sapiens 95.1 469
NP_001081716.1 ATPase, H+ transporting, lysosomal accessory protein 1, gene 2 precursor X. laevis 71.0 456
XP_001339012.2 PREDICTED: v-type proton ATPase subunit S1 D. rerio 57.2 460
Other hits (2 of 19) [Show all]SpeciesId(%)Len(aa)
NP_113973.1 Atp6ap1 gene product R. norvegicus 98.9 462
XP_001092845.2 PREDICTED: rab GDP dissociation inhibitor alpha isoform 2 M. mulatta 95.0 403

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; embryonic tissue; mammary gland; eye; mixed; kidney; bone; bone marrow; muscle; thyroid; connective tissue; thymus; spleen; lymph node; tongue; lung; liver; prostate; bladder; extraembryonic tissue; sympathetic ganglion; intestine; uncharacterized tissue; heart; dorsal root ganglion; ovary; joint; spinal cord; skin; inner ear; stomach; pancreas; fertilized ovum; pituitary gland; testis; oviduct; epididymis; salivary gland; pineal gland; olfactory mucosa; vagina; nasopharynx
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: X
Map position: X A7.3|X 37.96 cM
UniSTS entry: Chr X AI316502
UniSTS entry: Ndufb11
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (26)

BC048241.1 Mus musculus ATPase, H+ transporting, lysosomal accessory protein 1, mRNA (cDNA clone MGC:54567 IMAGE:6493219), complete cds PA
AK219865.1 Mus musculus cDNA, clone:Y2G0149O16, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000019231, based on BLAT search
AK216062.1 Mus musculus cDNA, clone:Y2G0137B05, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000019231, based on BLAT search P
AK214485.1 Mus musculus cDNA, clone:Y2G0131O18, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000019231, based on BLAT search
AK211612.1 Mus musculus cDNA, clone:Y2G0122F04, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000019231, based on BLAT search
AK198645.1 Mus musculus cDNA, clone:Y1G0128M04, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000019231, based on BLAT search P
AK182430.1 Mus musculus cDNA, clone:Y0G0121O22, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000019231, based on BLAT search P
AK181118.1 Mus musculus cDNA, clone:Y0G0117A02, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000019231, based on BLAT search P
AK180904.1 Mus musculus cDNA, clone:Y0G0116E14, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000019231, based on BLAT search P
AK180096.1 Mus musculus cDNA, clone:Y0G0112O06, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000019231, based on BLAT search
AK179299.1 Mus musculus cDNA, clone:Y0G0109N03, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000019231, based on BLAT search P
AK178122.1 Mus musculus cDNA, clone:Y0G0105I04, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000019231, based on BLAT search
AK177288.1 Mus musculus cDNA, clone:Y0G0102E09, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000019231, based on BLAT search P
AK220247.1 Mus musculus mRNA for mFLJ00383 protein P
AK150333.1 Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830003E02 product:ATPase, H+ transporting, lysosomal accessory protein 1, full insert sequence P
AK168080.1 Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-length enriched library, clone:I730056J15 product:ATPase, H+ transporting, lysosomal accessory protein 1, full insert sequence P
AK136210.1 Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length enriched library, clone:7420480K17 product:ATPase, H+ transporting, lysosomal accessory protein 1, full insert sequence P
AK159612.1 Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420025K12 product:ATPase, H+ transporting, lysosomal accessory protein 1, full insert sequence P
AK159449.1 Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420020F11 product:ATPase, H+ transporting, lysosomal accessory protein 1, full insert sequence P
AK158956.1 Mus musculus visual cortex cDNA, RIKEN full-length enriched library, clone:K530019C16 product:ATPase, H+ transporting, lysosomal accessory protein 1, full insert sequence P
AK161631.1 Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730411I04 product:ATPase, H+ transporting, lysosomal accessory protein 1, full insert sequence P
AK166793.1 Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0013I03 product:ATPase, H+ transporting, lysosomal accessory protein 1, full insert sequence P
AB031290.1 Mus musculus mRNA for C7-1 protein, complete cds P
NM_018794.4 Mus musculus ATPase, H+ transporting, lysosomal accessory protein 1 (Atp6ap1), mRNA P
AY033882.1 Mus musculus vacuolar H+ ATPase accessory subunit 1 mRNA, partial cds P
AK093961.1 Mus musculus cDNA fis, clone TRACH2019176, highly similar to VACUOLAR ATP SYNTHASE SUBUNIT AC45 PRECURSOR (EC 3.6.1.34) P

EST sequences (10 of 864) [Show all sequences]

CA563910.1 Clone NIA:K0319E05_IMAGE:30056116 bone 5' read
CA567296.1 Clone NIA:K0412D12_IMAGE:30060239 bone marrow 5' read P
CA573980.1 Clone NIA:K0608E04_IMAGE:30069555 bone marrow 5' read P
BY001542.1 Clone 2124003E11 mixed 5' read P
BY001585.1 Clone 2124003O19 mixed 5' read P
BY007175.1 Clone G430018M18 mixed 5' read
BY015399.1 Clone G730050K08 lung 5' read P
BY024770.1 Clone G930024N23 mammary gland 5' read P
BY027091.1 Clone G930042D02 mammary gland 5' read P
BY038655.1 Clone I730007A15 thymus 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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