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UGID:309984     UniGene Mm.211963     Mus musculus (mouse)   Vps13a
Vacuolar protein sorting 13A (yeast) (Vps13a)

Mouse protein-coding gene Vps13a. Represented by 127 ESTs from 70 cDNA libraries. Corresponds to reference sequence NM_173028.4. [UniGene 309984 - Mm.211963]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_766616.2 Vps13a gene product M. musculus 100.0 3165
NP_150648.2 vacuolar protein sorting-associated protein 13A isoform A H. sapiens 88.1 3173
NP_001086434.1 vacuolar protein sorting 13 homolog A X. laevis 66.8 923
NP_001112365.1 vacuolar protein sorting 13 homolog A D. rerio 64.9 3193
Other hits (2 of 22) [Show all]SpeciesId(%)Len(aa)
NP_001094445.2 vacuolar protein sorting 13 homolog A R. norvegicus 95.0 3166
XP_003911886.1 PREDICTED: vacuolar protein sorting-associated protein 13A, partial P. anubis 89.6 2335

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; uncharacterized tissue; bone marrow; mixed; pancreas; spleen; eye; joint; mammary gland; liver; stomach; lymph node; vagina; thymus; testis; fertilized ovum; ovary; brain; kidney; skin; lung; heart; bone; oviduct; inner ear
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 19
Map position: 19 B|19
UniSTS entry: Chr 19 BE687829
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (26)

NM_173028.4 Mus musculus vacuolar protein sorting 13A (yeast) (Vps13a), mRNA PA
AK052697.1 Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched library, clone:D630025L11 product:similar to CHOREIN [Homo sapiens], full insert sequence P
AK041811.1 Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630040A01 product:CHOREIN homolog [Homo sapiens], full insert sequence P
AK029649.1 Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930425F11 product:CHOREIN homolog [Homo sapiens], full insert sequence P
AK084751.1 Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched library, clone:D330038K10 product:CHOREA-ACANTHOCYTOSIS homolog [Homo sapiens], full insert sequence P
AK076578.1 Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4921521A12 product:CDNA FLJ12905 FIS, CLONE NT2RP2004366, WEAKLY SIMILAR TO VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 homolog [Homo sapiens], full insert sequence P
AK030073.1 Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932433M16 product:CDNA FLJ12905 FIS, CLONE NT2RP2004366, WEAKLY SIMILAR TO VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 homolog [Homo sapiens], full insert sequence P
BC050055.1 Mus musculus vacuolar protein sorting 13A (yeast), mRNA (cDNA clone IMAGE:6430836), partial cds PA
BC062130.1 Mus musculus vacuolar protein sorting 13A (yeast), mRNA (cDNA clone IMAGE:6331949), partial cds PA
AB115421.1 Mus musculus CHAC mRNA for chorein, complete cds, transcript A PA
AK220362.1 Mus musculus mRNA for mKIAA0986 protein P
BC096768.1 Mus musculus vacuolar protein sorting 13A (yeast), mRNA (cDNA clone IMAGE:30062967) PA
AK142462.1 Mus musculus 13 days embryo stomach cDNA, RIKEN full-length enriched library, clone:D530021C02 product:similar to Chorein (Chorea-acanthocytosis protein) [Homo sapiens], full insert sequence P
AK135983.1 Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length enriched library, clone:7420443P19 product:Similar to chorea acanthocytosis (Fragment) homolog [Homo sapiens], full insert sequence P
AK140793.1 Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130020A14 product:similar to Chorein (Chorea-acanthocytosis protein) [Homo sapiens], full insert sequence P
AB281698.1 Mus musculus Vps13a 3' variant V mRNA for hypothetical protein, partial cds P
AB281697.1 Mus musculus Vps13a 3' variant IV mRNA for hypothetical protein, partial cds P
AB281696.1 Mus musculus Vps13a 3' variant III mRNA for hypothetical protein, partial cds P
AB281695.1 Mus musculus Vps13a 3' variant II mRNA for hypothetical protein, partial cds P
AB281694.1 Mus musculus Vps13a 3' variant I mRNA for hypothetical protein, partial cds P
AB281693.1 Mus musculus Vps13a 5' variant V mRNA for hypothetical protein, partial cds
AB281692.1 Mus musculus Vps13a 5' variant IV mRNA for hypothetical protein, partial cds P
AB281691.1 Mus musculus Vps13a 5' variant III mRNA for hypothetical protein, partial cds P
AB281690.1 Mus musculus Vps13a 5' variant II mRNA for hypothetical protein, partial cds P
AB281689.1 Mus musculus Vps13a 5' variant I mRNA for hypothetical protein, partial cds P
BC145012.1 Mus musculus cDNA clone IMAGE:9053560 P

EST sequences (10 of 127) [Show all sequences]

CA563900.1 Clone NIA:K0319D07_IMAGE:30056106 bone 5' read P
CA567633.1 Clone NIA:K0417A03_IMAGE:30060674 bone marrow 5' read P
CA569322.1 Clone NIA:K0440H04_IMAGE:30062967 bone marrow 5' read P
CA573390.1 Clone NIA:K0600D07_IMAGE:30068778 bone marrow 5' read P
CA578126.1 Clone NIA:K0718H12_IMAGE:30075359 bone marrow 5' read
BY339444.1 Clone L230022D08 joint 5' read P
BY343480.1 Clone L230045O04 joint 5' read P
BY715346.1 Clone 4930516E05 testis 5' read
BY728376.1 Clone C130020A14 embryonic tissue 5' read P
BY732826.1 Clone F530013G14 kidney 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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