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UGID:260440     UniGene Mm.20247     Mus musculus (mouse)   C6
Complement component 6 (C6)

Mouse protein-coding gene C6. Represented by 51 ESTs from 16 cDNA libraries. Corresponds to reference sequence NM_016704.2. [UniGene 260440 - Mm.20247]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_057913.2 C6 gene product M. musculus 100.0 768
NP_000056.2 C6 gene product H. sapiens 80.1 763
NP_001085248.1 complement component 6, gene 1 precursor X. laevis 58.4 766
NP_956932.1 c6 gene product D. rerio 53.2 712
Other hits (20) [Show subset]SpeciesId(%)Len(aa)
NP_788263.1 C6 gene product R. norvegicus 88.5 765
NP_001009015.1 C6 gene product P. troglodytes 80.2 763
XP_001496433.1 PREDICTED: complement component C6-like E. caballus 80.1 765
XP_001087355.1 PREDICTED: complement component C6 isoform 2 M. mulatta 79.5 763
XP_002714170.1 PREDICTED: complement component 6 O. cuniculus 79.5 761
XP_536488.2 PREDICTED: complement component C6 isoform 1 C. lupus familiaris 79.3 763
XP_003899670.1 PREDICTED: complement component C6-like, partial P. anubis 78.7 393
NP_001090918.1 C6 gene product S. scrofa 78.5 763
XP_004017065.1 PREDICTED: complement component C6 O. aries 77.6 772
NP_001039444.1 C6 gene product B. taurus 77.3 772
XP_001371538.1 PREDICTED: complement component C6-like M. domestica 66.3 774
XP_002193277.1 PREDICTED: similar to complement component C6 T. guttata 62.2 757
NP_001138321.1 C6 gene product G. gallus 61.3 764
XP_003216279.1 PREDICTED: complement component C6-like A. carolinensis 58.8 758
XP_002940164.1 PREDICTED: complement component C6-like X. tropicalis 56.9 764
XP_003440120.1 PREDICTED: complement component C6-like O. niloticus 53.0 760
XP_004075187.1 PREDICTED: complement component C6-like O. latipes 51.3 749
NP_001118093.1 complement component C6 precursor O. mykiss 50.6 768
NP_001167046.1 Complement component C6 precursor S. salar 50.1 767
XP_003965156.1 PREDICTED: LOW QUALITY PROTEIN: complement component C6-like T. rubripes 49.7 747

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: liver; mixed; lung; testis; bladder; mammary gland; extraembryonic tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 15
Map position: 15 A1|15 1.97 cM
UniSTS entry: Chr 9 AW111623
UniSTS entry: C6
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (4)

AK041057.1 Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530072O03 product:complement component 6, full insert sequence P
AF184900.1 Mus musculus complement component 6 (C6) mRNA, complete cds P
NM_016704.2 Mus musculus complement component 6 (C6), mRNA PA
BC011251.1 Mus musculus complement component 6, mRNA (cDNA clone MGC:18813 IMAGE:4196330), complete cds PA

EST sequences (10 of 51) [Show all sequences]

BY076426.1 Clone K630004D12 mixed 5' read P
BY088427.1 Clone K630070I16 mixed 5' read P
BY091230.1 Clone K630085D01 liver 5' read
BY094056.1 Clone K630098N09 mixed 5' read P
BY095596.1 Clone K630106N06 extraembryonic tissue 5' read
BY099476.1 Clone K630127M16 mixed 5' read P
BY102980.1 Clone K630148L10 liver 5' read P
BY104344.1 Clone K630154L16 liver 5' read P
BY105449.1 Clone K630160N09 liver 5' read P
BY458499.1 Clone K630106N06 extraembryonic tissue 3' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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