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UGID:305785     UniGene Mm.200763     Mus musculus (mouse)   Lrch4
Leucine-rich repeats and calponin homology (CH) domain containing 4 (Lrch4)

Mouse protein-coding gene Lrch4. Represented by 345 ESTs from 108 cDNA libraries. Corresponds to 4 reference sequences (different isoforms). [UniGene 305785 - Mm.200763]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_666276.1 Lrch4 gene product M. musculus 100.0 679
NP_002310.2 LRCH4 gene product H. sapiens 91.5 682
XP_003199053.1 PREDICTED: leucine-rich repeat and calponin homology domain-containing protein 4-like D. rerio 63.1 708
NP_001090023.1 uncharacterized protein LOC735095 X. laevis 61.4 593
Other hits (2 of 28) [Show all]SpeciesId(%)Len(aa)
NP_001121023.1 Lrch4 gene product R. norvegicus 96.9 685
XP_001915770.1 PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat and calponin homology domain-containing protein 4 E. caballus 93.5 686

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: skin; mammary gland; thymus; uncharacterized tissue; embryonic tissue; brain; bone marrow; inner ear; eye; mixed; kidney; spleen; pituitary gland; muscle; bone; lung; thyroid; pancreas; ovary; lymph node; intestine; salivary gland; liver; testis; dorsal root ganglion; spinal cord; adrenal gland; sympathetic ganglion; nasopharynx
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 5
Map position: 5 G2|5
UniSTS entry: Chr 5 AI558103
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (27)

AK088331.1 Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430013D21 product:SIMILAR TO LEUCINE-RICH NEURONAL PROTEIN homolog [Mus musculus], full insert sequence P
AK131167.1 Mus musculus premature mRNA for mFLJ00248 protein P
AK217620.1 Mus musculus cDNA, clone:Y2G0142G03, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000031734, based on BLAT search P
AK217212.1 Mus musculus cDNA, clone:Y2G0141B02, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000031734, based on BLAT search P
AK214414.1 Mus musculus cDNA, clone:Y2G0131L05, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000031734, based on BLAT search P
AK213916.1 Mus musculus cDNA, clone:Y2G0129P15, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000031734, based on BLAT search P
AK212092.1 Mus musculus cDNA, clone:Y2G0123N10, strand:unspecified
AK202306.1 Mus musculus cDNA, clone:Y1G0141A16, strand:unspecified A
AK199281.1 Mus musculus cDNA, clone:Y1G0130L11, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000031734, based on BLAT search
AK194887.1 Mus musculus cDNA, clone:Y1G0116L16, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000031734, based on BLAT search
AK190785.1 Mus musculus cDNA, clone:Y1G0103M18, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000031734, based on BLAT search P
AK184942.1 Mus musculus cDNA, clone:Y0G0132A19, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000031734, based on BLAT search
AK182586.1 Mus musculus cDNA, clone:Y0G0123B15, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000031734, based on BLAT search
AK181397.1 Mus musculus cDNA, clone:Y0G0117P14, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000031734, based on BLAT search
AK177888.1 Mus musculus cDNA, clone:Y0G0104K02, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000031734, based on BLAT search
AK164339.1 Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130058B02 product:hypothetical protein, full insert sequence A
AK158025.1 Mus musculus adult inner ear cDNA, RIKEN full-length enriched library, clone:F930017I22 product:Similar to leucine-rich neuronal protein homolog [Mus musculus], full insert sequence P
AM275337.1 Mus musculus mRNA for mSin3A-binding protein (Sap25 gene) A
NM_001081962.2 Mus musculus sin3 associated polypeptide (Sap25), mRNA A
BC116638.1 Mus musculus cDNA clone IMAGE:40061596 P
NM_001168652.1 Mus musculus leucine-rich repeats and calponin homology (CH) domain containing 4 (Lrch4), transcript variant 2, mRNA PA
NR_033148.1 Mus musculus predicted gene 20605 (Gm20605), non-coding RNA PA
AK013756.1 Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:2900069C24 product:unclassifiable, full insert sequence
AK012693.1 Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2810008P14 product:unclassifiable, full insert sequence
BC012525.1 Mus musculus leucine-rich repeats and calponin homology (CH) domain containing 4, mRNA (cDNA clone MGC:19364 IMAGE:2598844), complete cds PA
BC027789.1 Mus musculus leucine-rich repeats and calponin homology (CH) domain containing 4, mRNA (cDNA clone IMAGE:5353990), partial cds PA
NM_146164.2 Mus musculus leucine-rich repeats and calponin homology (CH) domain containing 4 (Lrch4), transcript variant 1, mRNA PA

EST sequences (10 of 345) [Show all sequences]

CA750219.1 Clone IMAGE:6828845 brain 5' read P
BY014537.1 Clone G730046P09 lung 5' read P
BY028225.1 Clone G930047L15 mammary gland 5' read P
BY083251.1 Clone K630041P05 mixed 5' read P
BY103211.1 Clone K630149L20 mixed 5' read P
BY157239.1 Clone I830012A10 bone marrow 5' read
BY158626.1 Clone I830019A05 bone marrow 5' read
BY162401.1 Clone I830039O21 bone marrow 5' read P
BY162990.1 Clone I830043C13 bone marrow 5' read P
BY163244.1 Clone I830044I20 bone marrow 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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