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UGID:260330     UniGene Mm.19806     Mus musculus (mouse)   Hdac2
Histone deacetylase 2 (Hdac2)

Mouse protein-coding gene Hdac2. Represented by 119 ESTs from 74 cDNA libraries. Corresponds to reference sequence NM_008229.2. [UniGene 260330 - Mm.19806]

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_032255.2 Hdac2 gene product M. musculus 100.0 487
NP_001518.3 HDAC2 gene product H. sapiens 100.0 487
XP_001521848.1 PREDICTED: histone deacetylase 2-like, partial O. anatinus 100.0 442
NP_445899.1 Hdac2 gene product R. norvegicus 99.8 487
XP_001368989.1 PREDICTED: histone deacetylase 2-like M. domestica 99.8 487
XP_002192530.1 PREDICTED: histone deacetylase 2 T. guttata 99.8 487
NP_990162.1 HDAC2 gene product G. gallus 99.8 487
XP_003898337.1 PREDICTED: histone deacetylase 2 isoform 1 P. anubis 99.8 487
XP_001925353.2 PREDICTED: histone deacetylase 2-like S. scrofa 99.8 487
NP_001068614.1 HDAC2 gene product B. taurus 99.8 487
XP_004011238.1 PREDICTED: histone deacetylase 2 O. aries 99.8 487
XP_003204323.1 PREDICTED: histone deacetylase 2-like M. gallopavo 99.8 473
XP_532270.3 PREDICTED: histone deacetylase 2 C. lupus familiaris 99.8 457
XP_003215628.1 PREDICTED: histone deacetylase 2-like A. carolinensis 99.6 487
XP_001916752.2 PREDICTED: histone deacetylase 2-like E. caballus 99.6 487
NP_001084011.1 histone deacetylase 2 X. laevis 99.4 487
NP_775343.1 hdac1 gene product D. rerio 94.1 476
NP_647918.2 Rpd3 D. melanogaster 87.5 487
NP_506599.1 Protein HDA-1 C. elegans 73.4 450
XP_964367.1 histone deacetylase RPD3 N. crassa 70.5 467
NP_014069.1 Rpd3p S. cerevisiae 70.0 426
NP_195526.1 histone deacetylase 1/2 A. thaliana 68.6 493
XP_001695812.1 histone deacetylase C. reinhardtii 62.7 415
Other hits (2 of 50) [Show all]SpeciesId(%)Len(aa)
NP_001005432.1 hdac2 gene product X. tropicalis 99.4 487
XP_518700.2 PREDICTED: histone deacetylase 2 isoform 2 P. troglodytes 98.6 566

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; brain; mammary gland; pancreas; bone marrow; tongue; uncharacterized tissue; mixed; eye; testis; muscle; blood; thymus; uterus; intestine; extraembryonic tissue; skin; dorsal root ganglion; heart; spleen; lung; kidney; inner ear; molar; sympathetic ganglion
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 10
Map position: 10 B1|10 19.44 cM
UniSTS entry: Chr 10 D10Wsu179e
UniSTS entry: Chr 10 RH136178
UniSTS entry: Hdac2
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

AK051753.1 Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130072G11 product:histone deacetylase 2, full insert sequence P
AB221663.1 Mus musculus cDNA pooled tissues:(tissue_type=brain,dev_stage=8-12 days neonate,strain=BALB/c),(tissue_type=testis,dev_stage=adult, strain=C57BL/6J), clone:V01Y041K15 P
AK165734.1 Mus musculus 16 days neonate male diencephalon cDNA, RIKEN full-length enriched library, clone:G630033K24 product:Histone deacetylase 2 homolog [Mus musculus], full insert sequence P
AK141649.1 Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030004M17 product:histone deacetylase 2, full insert sequence P
AK135572.1 Mus musculus 11 days embryo gonad cDNA, RIKEN full-length enriched library, clone:7030407E09 product:histone deacetylase 2, full insert sequence P
BC138517.1 Mus musculus histone deacetylase 2, mRNA (cDNA clone MGC:170142 IMAGE:8861537), complete cds P
U31758.1 Mus musculus transcriptional regulator RPD3 homolog mRNA, complete cds P
NM_008229.2 Mus musculus histone deacetylase 2 (Hdac2), mRNA P

EST sequences (10 of 119) [Show all sequences]

CA578724.1 Clone NIA:K0727G05_IMAGE:30076204 bone marrow 5' read P
CA579283.1 Clone NIA:K0735C08_IMAGE:30076927 bone marrow 5' read P
BY008855.1 Clone G630033K24 brain 5' read P
BY093186.1 Clone K630095A07 embryonic tissue 5' read P
BY100768.1 Clone K630134H21 heart 5' read P
BY162810.1 Clone I830042B08 bone marrow 5' read P
BY456984.1 Clone K630095A07 embryonic tissue 3' read A
BY462243.1 Clone K630134H21 heart 3' read A
BY495595.1 Clone I830042B08 bone marrow 3' read A
BY517384.1 Clone I830170N12 bone marrow 3' read A

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

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