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UGID:259827     UniGene Mm.17484     Mus musculus (mouse)   Snca
Synuclein, alpha (Snca)

Mouse protein-coding gene Snca. Represented by 273 ESTs from 71 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 259827 - Mm.17484]

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001035916.1 Snca gene product M. musculus 100.0 139
NP_062042.1 Snca gene product R. norvegicus 100.0 139
NP_001139526.1 SNCA gene product H. sapiens 97.9 139
NP_001080623.1 synuclein, alpha (non A4 component of amyloid precursor) X. laevis 95.0 140
NP_957263.1 sncb gene product D. rerio 63.8 126
Other hits (19) [Show subset]SpeciesId(%)Len(aa)
XP_003899010.1 PREDICTED: alpha-synuclein-like isoform 1 P. anubis 99.0 103
NP_001009158.1 SNCA gene product P. troglodytes 97.9 139
XP_535656.1 PREDICTED: alpha-synuclein isoform 1 C. lupus familiaris 97.9 139
NP_001032222.1 SNCA gene product S. scrofa 97.9 139
NP_001239113.1 SNCA gene product O. aries 97.9 139
XP_002717046.1 PREDICTED: alpha-synuclein O. cuniculus 97.9 139
XP_001496954.1 PREDICTED: alpha-synuclein E. caballus 97.1 139
NP_001029213.1 SNCA gene product B. taurus 97.1 139
NP_001090876.1 snca gene product X. tropicalis 96.4 139
NP_001041718.1 SNCA gene product T. guttata 95.1 142
NP_990004.1 SNCA gene product G. gallus 94.4 142
XP_003205526.1 PREDICTED: alpha-synuclein-like M. gallopavo 94.4 142
XP_003221349.1 PREDICTED: alpha-synuclein-like A. carolinensis 90.1 141
XP_001085615.1 PREDICTED: beta-synuclein isoform 5 M. mulatta 77.6 133
XP_004074631.1 PREDICTED: alpha-synuclein-like O. latipes 71.7 126
XP_003455005.1 PREDICTED: alpha-synuclein-like O. niloticus 71.7 126
NP_001029020.1 alpha-synuclein T. rubripes 70.1 126
XP_001377197.1 PREDICTED: gamma-synuclein-like M. domestica 66.7 138
NP_001134041.1 Synuclein S. salar 61.0 105

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; embryonic tissue; spleen; mixed; skin; sympathetic ganglion; mammary gland; bone; eye; liver; extraembryonic tissue; prostate; thymus; lymph node; turbinate; uncharacterized tissue; olfactory mucosa; lung; connective tissue
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
Map position: 6 B3|6 29.15 cM
UniSTS entry: Chr 6 Snca
UniSTS entry: Chr 6 Snca
UniSTS entry: PMC153617P2
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

BC046764.1 Mus musculus synuclein, alpha, mRNA (cDNA clone MGC:57921 IMAGE:5693785), complete cds PA
AK205246.1 Mus musculus cDNA, clone:Y2G0101C01, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027017, based on BLAT search P
AK156316.1 Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830016F13 product:synuclein, alpha, full insert sequence P
NM_001042451.1 Mus musculus synuclein, alpha (Snca), transcript variant 1, mRNA PA
AF044672.1 Mus musculus alpha-synuclein mRNA, complete cds P
AF033261.1 Mus musculus alpha-synuclein (Syn) mRNA, complete cds PA
NM_009221.2 Mus musculus synuclein, alpha (Snca), transcript variant 2, mRNA PA
AF179273.1 Mus musculus alpha-synuclein mRNA, alternatively spliced, complete cds P

EST sequences (10 of 273) [Show all sequences]

BY037354.1 Clone I730001A04 spleen 5' read P
BY037465.1 Clone I730001H01 spleen 5' read P
BY039498.1 Clone I730011H04 spleen 5' read P
BY041424.1 Clone I730019E16 spleen 5' read P
BY042552.1 Clone I730024N15 spleen 5' read P
BY045868.1 Clone I730039H15 mixed 5' read P
BY086507.1 Clone K630061F17 mixed 5' read P
BY099071.1 Clone K630125N06 mixed 5' read
BY108395.1 Clone L330019J11 embryonic tissue 5' read P
BY152529.1 Clone G370025K05 skin 5' read

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

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