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UGID:282034     UniGene Mm.117541     Mus musculus (mouse)   H2afz
H2A histone family, member Z (H2afz)

Mouse protein-coding gene H2afz. Represented by 889 ESTs from 220 cDNA libraries. Corresponds to reference sequence NM_016750.2. [UniGene 282034 - Mm.117541]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_058030.1 H2afz gene product M. musculus 100.0 127
NP_073165.1 H2afz gene product R. norvegicus 100.0 127
XP_001364046.1 PREDICTED: histone H2A.Z-like M. domestica 100.0 127
XP_003225775.1 PREDICTED: histone H2A.Z-like isoform 1 A. carolinensis 100.0 127
XP_003966802.1 PREDICTED: histone H2A.Z-like T. rubripes 100.0 127
NP_001232784.1 H2A histone family, member V T. guttata 100.0 127
NP_001036788.1 h2afvb gene product D. rerio 100.0 127
XP_004080121.1 PREDICTED: histone H2A.Z-like O. latipes 100.0 127
XP_003458968.1 PREDICTED: histone H2A.Z-like O. niloticus 100.0 127
NP_001087351.1 MGC85536 protein X. laevis 100.0 127
NP_001016178.1 h2afv gene product X. tropicalis 100.0 127
NP_001026545.1 H2AFZ gene product G. gallus 100.0 127
XP_003205800.1 PREDICTED: histone H2A.Z-like M. gallopavo 100.0 127
XP_001108128.1 PREDICTED: histone H2A.Z-like isoform 2 M. mulatta 100.0 127
XP_517363.3 PREDICTED: histone H2A.Z-like isoform 2 P. troglodytes 100.0 127
NP_002097.1 H2AFZ gene product H. sapiens 100.0 127
XP_003434076.1 PREDICTED: histone H2A.Z C. lupus familiaris 100.0 127
NP_001116594.1 H2AFZ gene product S. scrofa 100.0 127
NP_777234.1 H2AFZ gene product B. taurus 100.0 127
NP_001009270.1 H2AFZ gene product O. aries 100.0 127
NP_524519.1 histone H2A variant, isoform A D. melanogaster 98.5 138
NP_500569.1 Protein HTZ-1 C. elegans 93.1 130
XP_001693700.1 histone H2A variant C. reinhardtii 90.3 143
NP_175683.1 histone H2A protein 9 A. thaliana 88.8 133
XP_963338.1 hypothetical protein NCU05347 N. crassa 79.9 139
NP_014631.1 Htz1p S. cerevisiae 79.8 133
Other hits (2 of 49) [Show all]SpeciesId(%)Len(aa)
XP_002129155.1 PREDICTED: histone H2A.V C. intestinalis 99.2 127
NP_001040529.1 H2A histone family member V B. mori 99.2 126

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; bone marrow; mammary gland; brain; thymus; eye; testis; prostate; mixed; pancreas; kidney; spleen; lung; uncharacterized tissue; liver; muscle; uterus; heart; thyroid; tongue; bone; skin; extraembryonic tissue; stomach; intestine; pituitary gland; inner ear; salivary gland; lymph node; nasopharynx; ovary
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 3
Map position: 3 G3|3
UniSTS entry: Chr 6 GDB:451604
UniSTS entry: Chr 7 MARC_6803-6804:992007476:3
UniSTS entry: Chr 7 MARC_31601-31602:1045759847:1
UniSTS entry: Chr 3 RH126517
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (23)

AK028176.1 Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2600014O08 product:H2A histone family, member Z, full insert sequence P
AK088704.1 Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430024B19 product:H2A histone family, member Z, full insert sequence P
AK044932.1 Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130014G07 product:H2A histone family, member Z, full insert sequence P
BC079903.1 Mus musculus H2A histone family, member Z, mRNA (cDNA clone MGC:96771 IMAGE:30622912), complete cds PA
AK212062.1 Mus musculus cDNA, clone:Y2G0123L23, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000059345, based on BLAT search
AK177643.1 Mus musculus cDNA, clone:Y0G0103I19, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000059345, based on BLAT search
AK146181.1 Mus musculus TIB-55 BB88 cDNA, RIKEN full-length enriched library, clone:I730030H15 product:H2A histone family, member Z, full insert sequence P
AK152848.1 Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830087J03 product:H2A histone family, member Z, full insert sequence P
AK150454.1 Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830007N24 product:H2A histone family, member Z, full insert sequence P
AK152398.1 Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830067P16 product:H2A histone family, member Z, full insert sequence P
AK168178.1 Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-length enriched library, clone:I730064A04 product:H2A histone family, member Z, full insert sequence P
AK151868.1 Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830041F09 product:H2A histone family, member Z, full insert sequence P
AK151509.1 Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830031C05 product:H2A histone family, member Z, full insert sequence P
AK151462.1 Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830030H04 product:H2A histone family, member Z, full insert sequence P
AK151052.1 Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830022D13 product:H2A histone family, member Z, full insert sequence P
AK169003.1 Mus musculus 13 days embryo liver cDNA, RIKEN full-length enriched library, clone:I920073D12 product:H2A histone family, member Z, full insert sequence P
AK143572.1 Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched library, clone:F420005H14 product:H2A histone family, member Z, full insert sequence P
BC158035.1 Mus musculus H2A histone family, member Z, mRNA (cDNA clone MGC:189838 IMAGE:9007338), complete cds P
BC171999.1 Mus musculus H2A histone family, member Z, mRNA (cDNA clone MGC:198704 IMAGE:9054285), complete cds P
BC147478.1 Mus musculus H2A histone family, member Z, mRNA (cDNA clone MGC:182306 IMAGE:9056200), complete cds P
U70494.1 Mus musculus histone H2A.Z (H2A.Z) mRNA, complete cds PA
NM_016750.2 Mus musculus H2A histone family, member Z (H2afz), mRNA P
AY074806.1 Mus musculus histone H2A.Z mRNA, complete cds P

EST sequences (10 of 889) [Show all sequences]

CA567547.1 Clone NIA:K0415G03_IMAGE:30060554 bone marrow 5' read P
CA574597.1 Clone NIA:K0618E08_IMAGE:30070519 bone marrow 5' read P
BY031100.1 Clone I1C0003F16 embryonic tissue 5' read P
BY037743.1 Clone I730002J10 thymus 5' read
BY043873.1 Clone I730030F03 thymus 5' read P
BY044158.1 Clone I730031H03 spleen 5' read P
BY044592.1 Clone I730033F17 spleen 5' read P
BY052120.1 Clone I730068F23 mixed 5' read P
BY052358.1 Clone I730069H09 spleen 5' read
BY052536.1 Clone I730070F18 spleen 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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