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UGID:278486     UniGene Mm.100647     Mus musculus (mouse)   Trim56
Tripartite motif-containing 56 (Trim56)

Mouse protein-coding gene Trim56. Represented by 27 ESTs from 13 cDNA libraries. Corresponds to reference sequence NM_201373.4. [UniGene 278486 - Mm.100647]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_958761.1 Trim56 gene product M. musculus 100.0 733
NP_112223.1 TRIM56 gene product H. sapiens 80.8 754
Other hits (2 of 9) [Show all]SpeciesId(%)Len(aa)
XP_001076813.2 PREDICTED: E3 ubiquitin-protein ligase TRIM56-like R. norvegicus 96.3 733
XP_527840.4 PREDICTED: E3 ubiquitin-protein ligase TRIM56 P. troglodytes 80.5 626

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: mammary gland; embryonic tissue; thymus; tongue; lung; brain; mixed; pancreas; liver
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 5
Map position: 5 G2|5
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (3)

AK037350.1 Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130009K11 product:hypothetical B-box zinc finger domain/RNA-binding region RNP-1 (RNA recognition motif)/RING finger containing protein, full insert sequence P
BC045615.1 Mus musculus tripartite motif-containing 56, mRNA (cDNA clone MGC:37358 IMAGE:4976515), complete cds PA
NM_201373.4 Mus musculus tripartite motif-containing 56 (Trim56), mRNA P

EST sequences (10 of 27) [Show all sequences]

BX520635.1 Clone IMAGp998E123824_;_IMAGE:1510643 mammary gland
BP770997.1 Clone mie16083 pancreas 3' read
EH100061.1 Clone ia185d08 tongue 3' read
W42178.1 Clone IMAGE:350628 embryonic tissue 5' read
AA671855.1 Clone IMAGE:963340 mammary gland 5' read
AA833398.1 Clone IMAGE:1381916 mammary gland 5' read
AA960417.1 Clone IMAGE:1381916 mammary gland 3' read
AI060373.1 Clone IMAGE:1379820 thymus 5' read
AI194202.1 Clone IMAGE:1494648 mammary gland 5' read
AI226363.1 Clone IMAGE:1510643 mammary gland 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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