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UGID:158947     UniGene Hs.178715     Homo sapiens (human)   PRDM11
PR domain containing 11 (PRDM11)

Human protein-coding gene PRDM11. Represented by 109 ESTs from 63 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 158947 - Hs.178715]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001243624.1 PRDM11 gene product H. sapiens 100.0 1176
NP_001171007.1 Prdm11 gene product M. musculus 90.6 467
XP_693848.3 PREDICTED: zinc finger protein 862 D. rerio 63.0 1110
Other hits (2 of 18) [Show all]SpeciesId(%)Len(aa)
XP_003313046.1 PREDICTED: PR domain-containing protein 11 isoform 1 P. troglodytes 99.2 510
XP_001104478.2 PREDICTED: zinc finger protein 862-like M. mulatta 99.2 991

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; mixed; prostate; liver; cervix; intestine; muscle; uterus; eye; lung; embryonic tissue; kidney; testis; ovary; placenta; mouth; thymus; mammary gland; pancreas; heart; nerve; ganglia; umbilical cord; uncharacterized tissue; bone; pituitary gland; lymph node; connective tissue; adrenal gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 11
Map position: 11p11
UniSTS entry: Chr 11 G20711
UniSTS entry: Chr 11 A006C44 [Map Viewer]
UniSTS entry: Chr 11 RH48405 [Map Viewer]
UniSTS entry: Chr 11 SHGC-53097
UniSTS entry: Chr 11 SHGC-57630
UniSTS entry: Chr 11 D11S3626
UniSTS entry: Chr 11 D11S2322E [Map Viewer]
UniSTS entry: Chr 11 RH48132
UniSTS entry: Chr 11 G02301
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

AY726563.1 Homo sapiens clone TESTIS-609 mRNA sequence A
AF275818.1 Homo sapiens PR-domain containing protein 11 (PRDM11) mRNA, complete cds P
AK024304.1 Homo sapiens cDNA FLJ14242 fis, clone OVARC1000678 PA
AK097878.1 Homo sapiens cDNA FLJ40559 fis, clone THYMU2002910
AK094792.1 Homo sapiens cDNA FLJ37473 fis, clone BRAWH2012540 P
AF086320.1 Homo sapiens full length insert cDNA clone ZD53C10
NM_001256696.1 Homo sapiens PR domain containing 11 (PRDM11), transcript variant 2, mRNA PA
NM_001256695.1 Homo sapiens PR domain containing 11 (PRDM11), transcript variant 1, mRNA PA
NR_046338.1 Homo sapiens PR domain containing 11 (PRDM11), transcript variant 3, non-coding RNA PA

EST sequences (10 of 109) [Show all sequences]

R17480.1 Clone IMAGE:32440 brain 5' read
AI074656.1 Clone IMAGE:1662789 mixed 3' read A
CB050524.1 Clone IMAGE:3271967 prostate 3' read A
CB050525.1 Clone IMAGE:3271967 prostate 5' read
BX105944.1 Clone IMAGp998B221929_;_IMAGE:782901 prostate PA
BX116579.1 Clone IMAGp998N045911_;_IMAGE:2380611 kidney
BX118411.1 Clone IMAGp998L134499_;_IMAGE:1839516 testis
AI208283.1 Clone IMAGE:1839516 testis 3' read A
CB120017.1 Clone L8SCK0-22-F12 liver 5' read
AI279002.1 Clone IMAGE:1882602 lung 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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