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UGID:147655     UniGene Hs.127249     Homo sapiens (human)   SNF8
SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) (SNF8)

Human protein-coding gene SNF8. Represented by 272 ESTs from 139 cDNA libraries. Corresponds to reference sequence NM_007241.2. [UniGene 147655 - Hs.127249]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_291046.1 Snf8 gene product M. musculus 100.0 257
NP_001007805.1 Snf8 gene product R. norvegicus 100.0 257
NP_001091233.1 uncharacterized protein LOC100037026 X. laevis 100.0 257
XP_003912748.1 PREDICTED: vacuolar-sorting protein SNF8 P. anubis 100.0 257
NP_009172.2 SNF8 gene product H. sapiens 100.0 257
XP_548183.2 PREDICTED: vacuolar-sorting protein SNF8 isoform 1 C. lupus familiaris 100.0 257
XP_002719354.1 PREDICTED: EAP30 subunit of ELL complex O. cuniculus 100.0 257
XP_002800449.1 PREDICTED: vacuolar-sorting protein SNF8-like M. mulatta 100.0 239
XP_001502290.1 PREDICTED: vacuolar-sorting protein SNF8-like E. caballus 99.6 257
XP_003358131.1 PREDICTED: vacuolar-sorting protein SNF8-like S. scrofa 99.6 257
NP_001068679.1 SNF8 gene product B. taurus 99.6 257
XP_004012847.1 PREDICTED: vacuolar-sorting protein SNF8 O. aries 99.6 257
NP_001007413.1 snf8 gene product D. rerio 91.5 257
NP_650987.1 larsen D. melanogaster 61.1 252
NP_001119065.1 ESCRT-II complex subunit VPS22 A. thaliana 58.0 243
NP_498052.1 Protein VPS-22 C. elegans 54.9 257
XP_001691712.1 subunit of ESCRT-II complex C. reinhardtii 50.4 238
Other hits (2 of 38) [Show all]SpeciesId(%)Len(aa)
XP_001367336.1 PREDICTED: vacuolar-sorting protein SNF8-like M. domestica 99.2 257
XP_418112.1 PREDICTED: vacuolar-sorting protein SNF8 G. gallus 98.1 257

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; prostate; ovary; heart; mouth; uterus; eye; blood; lung; skin; stomach; embryonic tissue; placenta; mammary gland; uncharacterized tissue; intestine; tonsil; bladder; bone; lymph node; ascites; salivary gland; mixed; testis; pancreas; liver; adrenal gland; connective tissue; kidney; muscle; nerve; vascular; amniotic fluid; larynx; pineal gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 17
Map position: 17q21.32
UniSTS entry: Chr 1 STS-T76997
UniSTS entry: Chr 1 D8S2279
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (5)

AK123127.1 Homo sapiens cDNA FLJ41132 fis, clone BRACE2025018
NM_007241.2 Homo sapiens SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) (SNF8), mRNA PA
AF156102.1 Homo sapiens ELL complex EAP30 subunit mRNA, complete cds PA
BC008976.1 Homo sapiens SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae), mRNA (cDNA clone MGC:9336 IMAGE:3452153), complete cds PA
BC038830.1 Homo sapiens SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae), mRNA (cDNA clone MGC:47686 IMAGE:3900806), complete cds PA

EST sequences (10 of 272) [Show all sequences]

AI032437.1 Clone IMAGE:1631339 mammary gland 3' read A
AA928596.1 Clone IMAGE:1552959 uncharacterized tissue 3' read
AI139491.1 Clone IMAGE:1710605 uterus 3' read PA
AI147514.1 Clone IMAGE:1615442 uncharacterized tissue 3' read
CB153140.1 Clone B1T694954-23-C05 brain 5' read
AI351985.1 Clone IMAGE:1933366 mixed 3' read A
AI424349.1 Clone IMAGE:2094480 prostate 3' read
AI453139.1 Clone IMAGE:2143474 pancreas 3' read PA
AI453149.1 Clone IMAGE:2143475 pancreas 3' read PA
AI453152.1 Clone IMAGE:2143485 pancreas 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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