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UGID:141436     UniGene Hs.91393     Homo sapiens (human)   LIN7C
Lin-7 homolog C (C. elegans) (LIN7C)

Human protein-coding gene LIN7C. Represented by 212 ESTs from 127 cDNA libraries. Corresponds to reference sequence NM_018362.3. [UniGene 141436 - Hs.91393]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_035829.1 Lin7c gene product M. musculus 100.0 196
NP_068623.1 Lin7c gene product R. norvegicus 100.0 196
XP_001368355.1 PREDICTED: protein lin-7 homolog C-like M. domestica 100.0 196
XP_002194172.1 PREDICTED: protein lin-7 homolog C T. guttata 100.0 196
NP_001026238.1 LIN7C gene product G. gallus 100.0 196
XP_003206139.1 PREDICTED: protein lin-7 homolog C-like M. gallopavo 100.0 196
XP_001089615.1 PREDICTED: protein lin-7 homolog C isoform 2 M. mulatta 100.0 196
XP_003910153.1 PREDICTED: protein lin-7 homolog C P. anubis 100.0 196
XP_521874.2 PREDICTED: protein lin-7 homolog C isoform 2 P. troglodytes 100.0 196
NP_060832.1 LIN7C gene product H. sapiens 100.0 196
XP_542543.2 PREDICTED: protein lin-7 homolog C C. lupus familiaris 100.0 196
XP_001502264.2 PREDICTED: protein lin-7 homolog C-like E. caballus 100.0 196
XP_003122952.1 PREDICTED: protein lin-7 homolog C-like S. scrofa 100.0 196
NP_001068899.1 LIN7C gene product B. taurus 100.0 196
XP_004016405.1 PREDICTED: protein lin-7 homolog C O. aries 100.0 196
XP_002709070.1 PREDICTED: lin-7 homolog C O. cuniculus 100.0 196
NP_001004672.1 lin7c gene product D. rerio 98.5 196
NP_001080131.1 lin-7 homolog C X. laevis 98.5 196
NP_651330.1 veli, isoform A D. melanogaster 88.7 194
NP_001122664.2 Protein LIN-7, isoform a C. elegans 77.6 192
Other hits (2 of 23) [Show all]SpeciesId(%)Len(aa)
XP_003225675.1 PREDICTED: protein lin-7 homolog C-like A. carolinensis 99.5 196
XP_003969727.1 PREDICTED: protein lin-7 homolog C-like isoform 2 T. rubripes 98.5 199

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; prostate; placenta; uterus; cervix; vascular; uncharacterized tissue; liver; intestine; eye; kidney; muscle; skin; ovary; lymph; blood; trachea; mixed; embryonic tissue; mammary gland; thyroid; lymph node; stomach; bone marrow; connective tissue; pancreas; larynx; lung; parathyroid; mouth; ascites; pituitary gland; bone
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 11
Map position: 11p14
UniSTS entry: Chr 11 D11S1220
UniSTS entry: Chr 11 A006U38
UniSTS entry: Chr 11 WI-17417 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (10)

BC053907.1 Homo sapiens lin-7 homolog C (C. elegans), mRNA (cDNA clone MGC:61447 IMAGE:6502685), complete cds PA
AK002077.1 Homo sapiens cDNA FLJ11215 fis, clone PLACE1008000, weakly similar to CHANNEL ASSOCIATED PROTEIN OF SYNAPSE-110 P
AL161951.1 Homo sapiens mRNA; cDNA DKFZp564G163 (from clone DKFZp564G163) A
NM_018362.3 Homo sapiens lin-7 homolog C (C. elegans) (LIN7C), mRNA P
AF090900.1 Homo sapiens clone HQ0189 PRO0189 mRNA, complete cds A
AK223156.1 Homo sapiens mRNA for lin-7 homolog C variant, clone: LNG03068 P
AK025540.1 Homo sapiens cDNA: FLJ21887 fis, clone HEP03135, highly similar to AF090900 Homo sapiens clone HQ0189 PRO0189 mRNA A
BC009774.1 Homo sapiens lin-7 homolog C (C. elegans), mRNA (cDNA clone IMAGE:4132182) PA
AL833601.1 Homo sapiens mRNA; cDNA DKFZp686G0667 (from clone DKFZp686G0667) PA
BC039459.1 Homo sapiens lin-7 homolog C (C. elegans), mRNA (cDNA clone IMAGE:5312672) A

EST sequences (10 of 212) [Show all sequences]

R17890.1 Clone IMAGE:31804 brain 5' read
AI074892.1 Clone IMAGE:1667081 skin 3' read A
AI077833.1 Clone IMAGE:1667847 parathyroid 3' read A
AI124617.1 Clone IMAGE:1539870 brain 3' read
CB045989.1 Clone IMAGE:3252656 kidney 3' read A
CB045990.1 Clone IMAGE:3252656 kidney 5' read
CB066766.1 Clone IMAGE: pancreas 3' read A
T06984.1 Clone HFBEB82 brain
AI364561.1 Clone IMAGE:1993214 uterus 3' read A
AI446517.1 Clone IMAGE:2142069 stomach 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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