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UGID:132296     UniGene Hs.8118     Homo sapiens (human)   SMCHD1
Structural maintenance of chromosomes flexible hinge domain containing 1 (SMCHD1)

Human protein-coding gene SMCHD1. Represented by 281 ESTs from 155 cDNA libraries. Corresponds to reference sequence NM_015295.2. [UniGene 132296 - Hs.8118]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_056110.2 SMCHD1 gene product H. sapiens 100.0 2004
XP_512045.2 PREDICTED: structural maintenance of chromosomes flexible hinge domain-containing protein 1 P. troglodytes 99.8 2004
NP_083163.3 structural maintenance of chromosomes flexible hinge domain-containing protein 1 M. musculus 91.0 2000
XP_699397.4 PREDICTED: SMC hinge domain containing 1-like, partial D. rerio 59.3 1182
Other hits (2 of 23) [Show all]SpeciesId(%)Len(aa)
XP_001086253.2 PREDICTED: structural maintenance of chromosomes flexible hinge domain-containing protein 1-like M. mulatta 99.1 2004
XP_003914255.1 PREDICTED: structural maintenance of chromosomes flexible hinge domain-containing protein 1 P. anubis 98.8 1967

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: lung; thymus; uncharacterized tissue; eye; pancreas; testis; mouth; intestine; blood; uterus; lymph node; mixed; brain; embryonic tissue; stomach; liver; cervix; muscle; kidney; skin; adrenal gland; thyroid; nerve; vascular; trachea; bone; ear; placenta; mammary gland; prostate; pharynx; ovary; ganglia; connective tissue; adipose tissue; heart
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 18
Map position: 18p11.32
UniSTS entry: Chr 18 STS-N33215
UniSTS entry: Chr 18 RH45745 [Map Viewer]
UniSTS entry: Chr 18 WI-20109 [Map Viewer]
UniSTS entry: Chr 18 WI-22474 [Map Viewer]
UniSTS entry: Chr 18 RH77973
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

AB014550.1 Homo sapiens mRNA for KIAA0650 protein, partial cds P
AL080138.1 Homo sapiens mRNA; cDNA DKFZp434K063 (from clone DKFZp434K063) PA
AK126324.1 Homo sapiens cDNA FLJ44350 fis, clone TRACH3006228 P
NM_015295.2 Homo sapiens structural maintenance of chromosomes flexible hinge domain containing 1 (SMCHD1), mRNA P
AK025646.1 Homo sapiens cDNA: FLJ21993 fis, clone HEP06576 PA
BC006008.1 Homo sapiens, clone IMAGE:4285740, mRNA PA
BC035774.1 Homo sapiens cDNA clone IMAGE:5580737, containing frame-shift errors PA

EST sequences (10 of 281) [Show all sequences]

AA903420.1 Clone IMAGE:1517158 uncharacterized tissue 3' read A
AA905494.1 Clone IMAGE:1506939 mixed 3' read
AI023310.1 Clone IMAGE:1654575 mixed 3' read A
AI025779.1 Clone IMAGE:1644947 testis 3' read
AI032533.1 Clone IMAGE:1654790 mixed 3' read A
CB067566.1 Clone IMAGE: pancreas 3' read P
CB067865.1 Clone IMAGE: pancreas 5' read
BX103220.1 Clone IMAGp998C155399_;_IMAGE:2184902 stomach A
BX103831.1 Clone IMAGp998C19828_;_IMAGE:360138 eye A
AI187414.1 Clone IMAGE:1751624 testis 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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