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UGID:140408     UniGene Hs.79564     Homo sapiens (human)   NPAS1
Neuronal PAS domain protein 1 (NPAS1)

Human protein-coding gene NPAS1. Represented by 59 ESTs from 31 cDNA libraries. EST representation biased toward fetus. Corresponds to reference sequence NM_002517.2. [UniGene 140408 - Hs.79564]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001168597.2 PREDICTED: neuronal PAS domain-containing protein 1 isoform 1 P. troglodytes 100.0 589
NP_002508.2 NPAS1 gene product H. sapiens 100.0 589
NP_032744.1 Npas1 gene product M. musculus 90.1 593
XP_687851.4 PREDICTED: neuronal PAS domain-containing protein 3 D. rerio 55.8 518
NP_001036575.1 trachealess, isoform B D. melanogaster 53.6 425
Other hits (2 of 31) [Show all]SpeciesId(%)Len(aa)
XP_003915826.1 PREDICTED: neuronal PAS domain-containing protein 1 isoform 1 P. anubis 99.5 589
XP_001112801.1 PREDICTED: neuronal PAS domain-containing protein 1-like isoform 3 M. mulatta 99.2 590

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: fetus [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; skin; adrenal gland; tonsil; testis; ovary; intestine; stomach; liver; lung; lymph; salivary gland; thyroid; eye; lymph node; uncharacterized tissue; kidney; bone; embryonic tissue; mixed
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 19
Map position: 19q13.2-q13.3
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

NM_002517.2 Homo sapiens neuronal PAS domain protein 1 (NPAS1), mRNA PA
AB054002.1 Homo sapiens NPAS1 mRNA for neuronal PAS domain protein 1, complete cds PA
AK299128.1 Homo sapiens cDNA FLJ51724 complete cds, highly similar to Neuronal PAS domain-containing protein 1 PA
U51628.1 Human MOP5 mRNA, partial cds PA
U77968.1 Human neuronal PAS1 (NPAS1) mRNA, complete cds P
BC039016.1 Homo sapiens neuronal PAS domain protein 1, mRNA (cDNA clone MGC:47758 IMAGE:5770371), complete cds PA

EST sequences (10 of 59) [Show all sequences]

BX107161.1 Clone IMAGp998J21176_;_IMAGE:42596 brain A
AI916513.1 Clone IMAGE:2299238 kidney 3' read
BX411336.1 Clone CS0DF033YK01 brain 3' read P
BX412863.1 Clone CS0DF011YD24 brain 3' read P
BX431562.2 Clone CS0DF011YF18 brain 5' read
BX431563.2 Clone CS0DF011YF18 brain 5' read
BX420694.2 Clone CS0DF032YH10 brain 5' read P
BX452259.2 Clone CS0DF033YK01 brain 5' read P
AW002638.1 Clone IMAGE:2524445 uncharacterized tissue 3' read PA
AW161284.1 Clone IMAGE:2782563 brain 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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