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UGID:6280530     UniGene Hs.745030     Homo sapiens (human)   ABCA11P
ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene (ABCA11P)

Human pseudo gene ABCA11P. Represented by 126 ESTs from 78 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 6280530 - Hs.745030]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001494019.3 PREDICTED: ATP-binding cassette sub-family A member 10 E. caballus 76.4 711
NP_671753.2 ATP-binding cassette sub-family A member 9 M. musculus 68.3 445
NP_006515.2 ZNF138 gene product H. sapiens 66.5 194
NP_001092716.1 abca5 gene product D. rerio 59.1 220
Other hits (2 of 19) [Show all]SpeciesId(%)Len(aa)
XP_001378941.2 PREDICTED: ATP-binding cassette sub-family A member 10 M. domestica 70.3 454
XP_221101.5 PREDICTED: ATP-binding cassette, sub-family A (ABC1), member 9 R. norvegicus 69.7 445

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
cDNA Sources: brain; liver; mammary gland; stomach; lung; testis; pharynx; eye; placenta; intestine; kidney; uncharacterized tissue; embryonic tissue; uterus; bladder; heart; mouth; vascular; trachea; prostate; mixed; lymph node; muscle; thymus; ascites; nerve; pancreas; blood; bone
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 4
Map position: 4p16.3
UniSTS entry: Chr 4 A009Z27
UniSTS entry: Chr 4 G33021
UniSTS entry: Chr 1 D11S3316
UniSTS entry: Chr 1 D11S2921
UniSTS entry: Chr 1 D11S2560
UniSTS entry: Chr 4 RH36065
UniSTS entry: Chr 1 RH80030
UniSTS entry: Chr 17 SHGC-67596
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (14)

BC060316.1 Homo sapiens cDNA clone IMAGE:3882186, partial cds PA
BC065035.1 Homo sapiens cDNA clone IMAGE:6171511, partial cds A
NM_133474.3 Homo sapiens zinc finger protein 721 (ZNF721), mRNA PA
BC099730.1 Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 11 (pseudogene), mRNA (cDNA clone IMAGE:40024298) P
BC098291.1 Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 11 (pseudogene), mRNA (cDNA clone IMAGE:40024296), containing frame-shift errors P
BC098259.1 Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 11 (pseudogene), mRNA (cDNA clone IMAGE:40024295) P
BC098116.1 Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 11 (pseudogene), mRNA (cDNA clone IMAGE:40024290) P
AK024359.1 Homo sapiens cDNA FLJ14297 fis, clone PLACE1008941 P
BC105084.1 Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 11 (pseudogene), mRNA (cDNA clone IMAGE:8144087) P
BC112069.1 Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 11 (pseudogene), mRNA (cDNA clone IMAGE:8327537) P
AK303674.1 Homo sapiens cDNA FLJ57767 complete cds, moderately similar to Zinc finger protein 141 P
BC143677.1 Homo sapiens cDNA clone IMAGE:9052191 P
NR_002451.2 Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene (ABCA11P), non-coding RNA PA
BC040413.1 Homo sapiens, clone IMAGE:5186165, mRNA

EST sequences (10 of 126) [Show all sequences]

AI095103.1 Clone IMAGE:1686771 brain 3' read
AI138991.1 Clone IMAGE:1736106 testis 3' read
BX090799.1 Clone IMAGp998N073463_;_IMAGE:1372230 lymph node P
AI223001.1 Clone IMAGE:1845565 mixed 3' read A
CB163082.1 Clone L18POOL1n1-46-C08 liver 5' read A
AL037864.1 Clone DKFZp564J117 brain 5' read
BX471135.1 Clone DKFZp686K19124 muscle 5' read
CD652116.1 Clone IMAGE:30422070 embryonic tissue 5' read P
CD688651.1 pharynx
CF139813.1 Clone IMAGE:3097414 prostate 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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