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UGID:5795592     UniGene Hs.731775     Homo sapiens (human)   CAPN12
Calpain 12 (CAPN12)

Human protein-coding gene CAPN12. Represented by 63 ESTs from 35 cDNA libraries. EST representation biased toward fetus. Corresponds to reference sequence NM_144691.3. [UniGene 5795592 - Hs.731775]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_653292.2 CAPN12 gene product H. sapiens 100.0 718
NP_001104277.1 Capn12 gene product M. musculus 86.9 719
NP_001083150.1 uncharacterized protein LOC398772 X. laevis 57.2 194
NP_001138267.1 calpain 1, large subunit D. rerio 55.7 210
NP_477048.1 Calpain-A, isoform A D. melanogaster 52.6 175
NP_871643.1 Protein CLP-4, isoform b C. elegans 50.0 176
Other hits (2 of 37) [Show all]SpeciesId(%)Len(aa)
XP_003915528.1 PREDICTED: calpain-12 P. anubis 96.8 718
XP_003954414.1 PREDICTED: LOW QUALITY PROTEIN: calpain-12, partial P. troglodytes 92.7 576

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: fetus [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: mixed; uncharacterized tissue; muscle; uterus; pharynx; heart; brain; intestine; prostate; testis; kidney; placenta; esophagus; trachea; liver; pancreas; stomach; lung; mammary gland; bone
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 19
Map position: 19q13.2
UniSTS entry: Chr 19 SHGC-16522 [Map Viewer]
UniSTS entry: Chr 19 RH16012
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

AK127398.1 Homo sapiens cDNA FLJ45489 fis, clone BRTHA2005448, highly similar to Mus musculus calpain 12 (Capn12) P
AK125713.1 Homo sapiens cDNA FLJ43725 fis, clone TESOP2007978, moderately similar to Mus musculus Capn12 gene for calpain 12 P
BC014027.2 Homo sapiens calpain 12, mRNA (cDNA clone IMAGE:4300206), partial cds PA
NM_144691.3 Homo sapiens calpain 12 (CAPN12), mRNA P
AK094707.1 Homo sapiens cDNA FLJ37388 fis, clone BRAMY2026713
BC040022.1 Homo sapiens calpain 12, mRNA (cDNA clone IMAGE:3854861), with apparent retained intron PA

EST sequences (10 of 63) [Show all sequences]

AI015383.1 Clone IMAGE:1618360 testis 3' read A
AI076919.1 Clone IMAGE:1637890 mammary gland 3' read A
CB049456.1 Clone IMAGE:3271212 prostate 5' read A
CB049455.1 Clone IMAGE:3271212 prostate 3' read A
BX096834.1 Clone IMAGp998P144353_;_IMAGE:1714045 placenta
AI242170.1 Clone IMAGE:1851117 mixed 3' read
AI302846.1 Clone IMAGE:1900992 kidney 3' read A
AI521582.1 Clone IMAGE:2183124 stomach 3' read
AI799215.1 Clone IMAGE:2261488 uterus 3' read
AI824068.1 Clone IMAGE:2404856 kidney 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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