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UGID:4248972     UniGene Hs.725151     Homo sapiens (human)   CTR9
Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) (CTR9)

Human protein-coding gene CTR9. Represented by 424 ESTs from 215 cDNA libraries. Corresponds to reference sequence NM_014633.3. [UniGene 4248972 - Hs.725151]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_055448.1 CTR9 gene product H. sapiens 100.0 1172
XP_003910271.1 PREDICTED: RNA polymerase-associated protein CTR9 homolog P. anubis 99.9 1172
XP_001094093.2 PREDICTED: RNA polymerase-associated protein CTR9 homolog M. mulatta 99.8 1165
XP_003639833.1 PREDICTED: RNA polymerase-associated protein CTR9 homolog C. lupus familiaris 99.7 1172
XP_001918026.1 PREDICTED: RNA polymerase-associated protein CTR9 homolog E. caballus 99.7 1157
XP_521841.3 PREDICTED: RNA polymerase-associated protein CTR9 homolog isoform 2 P. troglodytes 99.6 1214
XP_002708860.1 PREDICTED: SH2 domain binding protein 1 O. cuniculus 99.6 1172
NP_033457.2 Ctr9 gene product M. musculus 99.4 1172
NP_001086446.1 RNA polymerase-associated protein CTR9 homolog X. laevis 94.8 1156
NP_001077052.1 ctr9 gene product D. rerio 94.5 1159
NP_788449.1 CG2469, isoform B D. melanogaster 70.9 1143
NP_499090.1 hypothetical protein B0464.2 C. elegans 48.1 799
Other hits (2 of 34) [Show all]SpeciesId(%)Len(aa)
NP_001094131.1 Ctr9, Paf1/RNA polymerase II complex component, homolog R. norvegicus 99.5 1172
XP_004016202.1 PREDICTED: RNA polymerase-associated protein CTR9 homolog O. aries 99.5 1172

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; embryonic tissue; kidney; uncharacterized tissue; lung; pituitary gland; uterus; larynx; lymph node; stomach; mouth; mammary gland; blood; skin; liver; mixed; intestine; prostate; eye; ovary; muscle; connective tissue; placenta; salivary gland; bladder; bone marrow; vascular; spleen; pancreas; thymus; thyroid; amniotic fluid; heart; nerve; trachea; bone; ear; tonsil; cervix; parathyroid; lymph; spinal cord; pharynx; ascites; adipose tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 11
Map position: 11p15.3
UniSTS entry: Chr 11 G62052
UniSTS entry: Chr 11 RH25374 [Map Viewer]
UniSTS entry: RH93322
UniSTS entry: Chr 11 SHGC-31621 [Map Viewer]
UniSTS entry: Chr 11 CTR9
UniSTS entry: MARC_17483-17484:1016467358:1
UniSTS entry: Chr 1 D15S1477
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (5)

BC058914.1 Homo sapiens Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae), mRNA (cDNA clone MGC:65041 IMAGE:6527835), complete cds PA
NM_014633.3 Homo sapiens Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) (CTR9), mRNA PA
D63875.1 Homo sapiens mRNA for KIAA0155 gene, partial cds P
AK291794.1 Homo sapiens cDNA FLJ76427 complete cds, highly similar to Homo sapiens SH2 domain binding protein 1 (tetratricopeptide repeat containing) (SH2BP1), mRNA P
BC014335.1 Homo sapiens SH2 domain binding protein 1 (tetratricopeptide repeat containing), mRNA (cDNA clone IMAGE:4046505), with apparent retained intron PA

EST sequences (10 of 424) [Show all sequences]

AA903179.1 Clone IMAGE:1517176 uncharacterized tissue 3' read A
AA906369.1 Clone IMAGE:1506414 mixed 3' read A
AA972949.1 Clone IMAGE:1577853 mixed 3' read A
AA976298.1 Clone IMAGE:1591438 kidney 3' read A
AA977091.1 Clone IMAGE:1587240 uncharacterized tissue 3' read A
AA907605.1 Clone IMAGE:1540599 mixed 3' read A
AI015136.1 Clone IMAGE:1622145 embryonic tissue 3' read A
AI040043.1 Clone IMAGE:1657612 embryonic tissue 3' read
AI050019.1 Clone IMAGE:1699393 kidney 3' read A
AI140348.1 Clone IMAGE:1693199 heart 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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