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UGID:3884034     UniGene Hs.723344     Homo sapiens (human)   HLA-DRB6
Major histocompatibility complex, class II, DR beta 6 (pseudogene) (HLA-DRB6)

Human pseudo gene HLA-DRB6. Represented by 59 ESTs from 33 cDNA libraries. Corresponds to reference sequence NR_001298.1. [UniGene 3884034 - Hs.723344]

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_068818.4 HLA-DRB4 gene product H. sapiens 99.6 265
NP_034512.2 H2-Eb1 gene product M. musculus 76.2 260
NP_001177324.1 uncharacterized protein LOC100462907 precursor X. laevis 47.8 245
Other hits (2 of 15) [Show all]SpeciesId(%)Len(aa)
NP_001037726.1 MAMU-DRB1 gene product M. mulatta 91.0 265
XP_001165809.3 PREDICTED: HLA class II histocompatibility antigen, DR beta 5 chain isoform 8 P. troglodytes 88.3 265

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: lymph node; lung; mouth; uterus; testis; pancreas; intestine; thyroid; muscle; epididymis; placenta; uncharacterized tissue; tonsil; blood; prostate; larynx; eye
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
Map position: 6p21.3
UniSTS entry: Chr 6 RH69091 [Map Viewer]
UniSTS entry: Chr 6 RH69085 [Map Viewer]
UniSTS entry: SHGC-35283
UniSTS entry: Chr 6 RH80065
UniSTS entry: RH46844
UniSTS entry: Chr 6 RH69092
UniSTS entry: RH80800
UniSTS entry: Chr 6 RH15772
UniSTS entry: STS-V00522
UniSTS entry: Chr 6 RH69107
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (5)

U33547.1 Homo sapiens MHC class II antigen HLA-DRB6 mRNA, partial cds P
AF005487.1 Homo sapiens MHC class II antigen (DRB6) mRNA, HLA-DRB6*0201 allele, sequence P
L76566.1 Homo sapiens HLA-DRB6 mRNA complete sequence P
L76565.1 Homo sapiens HLA-DRB6 mRNA, complete sequence P
NR_001298.1 Homo sapiens major histocompatibility complex, class II, DR beta 6 (pseudogene) (HLA-DRB6), non-coding RNA P

Model sequences (1)

XR_159462.1 PREDICTED: Homo sapiens HLA class II histocompatibility antigen, DR beta 3 chain-like (LOC100996809), misc_RNA P

EST sequences (10 of 59) [Show all sequences]

AI074389.1 Clone IMAGE:1594388 intestine 3' read A
BX097013.1 Clone IMAGp998K245670_;_IMAGE:2289167 uterus A
AI249467.1 Clone IMAGE:2000720 lymph node 3' read A
AI357174.1 Clone IMAGE:2001579 lymph node 3' read A
AI354531.1 Clone IMAGE:1967879 lymph node 3' read A
AI439930.1 Clone IMAGE:2135133 lymph node 3' read A
AI500041.1 Clone IMAGE:2174906 lymph node 3' read A
AI572886.1 Clone IMAGE:2174215 lymph node 3' read A
AI572972.1 Clone IMAGE:2174337 lymph node 3' read PA
AI635608.1 Clone IMAGE:2289167 uterus 3' read A

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

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