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UGID:3880288     UniGene Hs.720509     Homo sapiens (human)   FAM47E
Family with sequence similarity 47, member E (FAM47E)

Human protein-coding gene FAM47E. Represented by 59 ESTs from 34 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 3880288 - Hs.720509]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001130042.1 FAM47E gene product H. sapiens 100.0 392
NP_780305.1 Stbd1 gene product M. musculus 62.2 261
Other hits (2 of 12) [Show all]SpeciesId(%)Len(aa)
XP_001149314.1 PREDICTED: protein FAM47E isoform 4 P. troglodytes 97.7 392
XP_002808457.1 PREDICTED: LOW QUALITY PROTEIN: protein FAM47E-like M. mulatta 93.6 392

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; mixed; pancreas; eye; placenta; testis; mouth; intestine; trachea; connective tissue; heart; kidney; lung; epididymis; nerve; ovary
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 4
Map position: 4q21.1
UniSTS entry: Chr 4 RH99167
UniSTS entry: Chr 4 SHGC-63501
UniSTS entry: Chr 4 D4S2479E
UniSTS entry: Chr 4 WI-17734 [Map Viewer]
UniSTS entry: Chr 4 SHGC-63500
UniSTS entry: Chr 4 SHGC-133062
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (4)

AK124936.1 Homo sapiens cDNA FLJ42946 fis, clone BRSTN2005721 P
NM_001136570.2 Homo sapiens family with sequence similarity 47, member E (FAM47E), transcript variant 1, mRNA P
NM_001242939.1 Homo sapiens FAM47E-STBD1 readthrough (FAM47E-STBD1), mRNA PA
NM_001242936.1 Homo sapiens family with sequence similarity 47, member E (FAM47E), transcript variant 2, mRNA P

EST sequences (10 of 59) [Show all sequences]

AA909924.1 Clone IMAGE:1540860 mixed 3' read A
AI698754.1 Clone IMAGE:2302573 mixed 3' read
AI934358.1 Clone IMAGE:2463898 kidney 3' read P
BX391658.2 Clone CS0DI020YF07 placenta 3' read
BX335786.1 Clone CS0DI020YI01 placenta 3' read P
BX335787.2 Clone CS0DI020YI01 placenta 5' read P
AW008575.1 Clone IMAGE:2502537 brain 3' read
CD673800.1 Clone fs04g08 eye 5' read P
AW183528.1 Clone IMAGE:2663261 mixed 3' read
AW511090.1 Clone IMAGE:2912248 mixed 3' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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