NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
Finding cDNAs

UGID:2725971     UniGene Hs.656653     Homo sapiens (human)   CTNNA1
Catenin (cadherin-associated protein), alpha 1, 102kDa (CTNNA1)

Human protein-coding gene CTNNA1. Represented by 158 ESTs from 52 cDNA libraries. EST representation biased toward fetus. Corresponds to reference sequence NM_015564.2. [UniGene 2725971 - Hs.656653]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001114014.1 PREDICTED: leucine-rich repeat transmembrane neuronal protein 2 isoform 1 M. mulatta 100.0 515
XP_003900218.1 PREDICTED: leucine-rich repeat transmembrane neuronal protein 2 P. anubis 100.0 515
XP_001172386.1 PREDICTED: leucine-rich repeat transmembrane neuronal protein 2 isoform 2 P. troglodytes 100.0 515
NP_056379.1 LRRTM2 gene product H. sapiens 100.0 515
XP_538650.2 PREDICTED: leucine-rich repeat transmembrane neuronal protein 2 isoform 1 C. lupus familiaris 99.6 515
NP_821072.1 Lrrtm2 gene product M. musculus 98.6 514
XP_003201382.1 PREDICTED: leucine-rich repeat transmembrane neuronal protein 2-like D. rerio 69.7 541
Other hits (2 of 16) [Show all]SpeciesId(%)Len(aa)
NP_001092847.1 LRRTM2 gene product B. taurus 99.4 515
XP_004008892.1 PREDICTED: leucine-rich repeat transmembrane neuronal protein 2 O. aries 99.4 515

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: fetus [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; connective tissue; kidney; liver; spleen; placenta; eye; pineal gland; uncharacterized tissue; testis; nerve; muscle; lymph node
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 5
Map position: 5q31.2
UniSTS entry: Chr 5 SHGC-2340
UniSTS entry: Chr 5 RH91185
UniSTS entry: Lrrtm2
UniSTS entry: Chr 5 MARC_13807-13808:1006870442:1
UniSTS entry: Chr 5 D5S1856
UniSTS entry: Chr 5 A002T30
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

AY182026.1 Homo sapiens leucine-rich repeat transmembrane neuronal 2 protein mRNA, complete cds P
NM_015564.2 Homo sapiens leucine rich repeat transmembrane neuronal 2 (LRRTM2), mRNA P
BC126410.1 Homo sapiens leucine rich repeat transmembrane neuronal 2, mRNA (cDNA clone MGC:161688 IMAGE:8992126), complete cds P
BC126408.1 Homo sapiens leucine rich repeat transmembrane neuronal 2, mRNA (cDNA clone MGC:161686 IMAGE:8992124), complete cds P
AK291064.1 Homo sapiens cDNA FLJ76283 complete cds, highly similar to Homo sapiens leucine rich repeat transmembrane neuronal 2 (LRRTM2), mRNA P
AK309790.1 Homo sapiens cDNA, FLJ99831 P
BC143926.1 Homo sapiens leucine rich repeat transmembrane neuronal 2, mRNA (cDNA clone MGC:177461 IMAGE:9052444), complete cds P
AK297332.1 Homo sapiens cDNA FLJ52416 complete cds, highly similar to Leucine-rich repeat transmembrane neuronal protein 2 precursor P
AB007876.1 Homo sapiens KIAA0416 mRNA, partial cds P

EST sequences (10 of 158) [Show all sequences]

R18423.1 Clone IMAGE:30951 brain 5' read
CA976056.1 Clone IMAGE:6202466 nerve 5' read
BX104378.1 Clone IMAGp998I19464_;_IMAGE:230874 pineal gland
CB152732.1 Clone B1T694954-30-A04 brain 5' read
CB155141.1 Clone B2N807043-8-D02 brain 5' read P
T17043.1 brain 3' read
AI635354.1 Clone IMAGE:2238895 uncharacterized tissue 3' read
BX435471.2 Clone CS0DF029YD09 brain 3' read
BX410038.1 Clone CS0DF029YD09 brain 5' read P
BX461574.2 Clone CS0DF029YD09 brain 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help