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UGID:2725148     UniGene Hs.655830     Homo sapiens (human)   HELLS
Helicase, lymphoid-specific (HELLS)

Human protein-coding gene HELLS. Represented by 202 ESTs from 94 cDNA libraries. Corresponds to reference sequence NM_018063.3. [UniGene 2725148 - Hs.655830]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_060533.2 HELLS gene product H. sapiens 100.0 837
XP_001151210.2 PREDICTED: lymphoid-specific helicase isoform 9 P. troglodytes 99.9 883
NP_032260.2 Hells gene product M. musculus 93.2 820
NP_001086442.1 helicase, lymphoid-specific X. laevis 78.9 834
NP_001032178.1 hells gene product D. rerio 71.8 841
NP_498468.2 Protein ISW-1 C. elegans 55.0 200
XP_962568.2 hypothetical protein NCU06306 N. crassa 54.1 730
NP_201476.1 chromatin remodeling 1 A. thaliana 53.5 530
NP_523719.1 imitation SWI, isoform A D. melanogaster 51.8 511
NP_116696.2 Irc5p S. cerevisiae 51.2 598
XP_001698199.1 SNF2 superfamily protein C. reinhardtii 48.7 582
Other hits (2 of 63) [Show all]SpeciesId(%)Len(aa)
XP_001095698.1 PREDICTED: lymphoid-specific helicase isoform 13 M. mulatta 99.3 836
XP_003904075.1 PREDICTED: LOW QUALITY PROTEIN: lymphoid-specific helicase P. anubis 97.7 868

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; bone marrow; embryonic tissue; larynx; liver; mixed; cervix; uncharacterized tissue; eye; mammary gland; bladder; placenta; lung; lymph node; kidney; brain; muscle; skin; uterus; bone; thymus; pancreas; blood; prostate; ear; stomach; ascites; mouth; heart; pharynx; connective tissue; thyroid; nerve
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 10
Map position: 10q24.2
UniSTS entry: Chr 10 RH93667
UniSTS entry: Chr 10 STS-N95450 [Map Viewer]
UniSTS entry: Chr 10 A008Z38 [Map Viewer]
UniSTS entry: Chr 1 GDB:631813
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (26)

BX538033.1 Homo sapiens mRNA; cDNA DKFZp686J0676 (from clone DKFZp686J0676); complete cds PA
AB102723.1 Homo sapiens HELLS mRNA for lymphoid specific helicase variant8, complete cds P
AB102722.1 Homo sapiens HELLS mRNA for lymphoid specific helicase variant7, complete cds P
AB102721.1 Homo sapiens HELLS mRNA for lymphoid specific helicase variant6, complete cds P
AB102720.1 Homo sapiens HELLS mRNA for lymphoid specific helicase variant5, complete cds P
AB102719.1 Homo sapiens HELLS mRNA for lymphoid specific helicase variant4, complete cds P
AB102718.1 Homo sapiens HELLS mRNA for lymphoid specific helicase variant3, complete cds P
AB102717.1 Homo sapiens HELLS mRNA for lymphoid specific helicase variant2, complete cds P
AB102716.1 Homo sapiens HELLS mRNA for lymphoid specific helicase variant1, complete cds P
BC068440.1 Homo sapiens cDNA clone IMAGE:4824050, containing frame-shift errors PA
AK001201.1 Homo sapiens cDNA FLJ10339 fis, clone NT2RM2000740, weakly similar to POSSIBLE GLOBAL TRANSCRIPTION ACTIVATOR SNF2L P
AB113249.1 Homo sapiens HELLS mRNA for lymphoid specific helicase variant10, complete cds P
AB113248.1 Homo sapiens HELLS mRNA for lymphoid specific helicase variant9, complete cds P
NM_018063.3 Homo sapiens helicase, lymphoid-specific (HELLS), mRNA PA
AF155827.1 Homo sapiens proliferation-associated SNF2-like protein (SMARCA6) mRNA, complete cds PA
AK022928.1 Homo sapiens cDNA FLJ12866 fis, clone NT2RP2003691 P
AY007108.1 Homo sapiens clone TCCCTA00017 mRNA sequence PA
AB074174.1 Homo sapiens primary neuroblastoma cDNA, clone:Nbla10143, full insert sequence P
BC111789.1 Homo sapiens cDNA clone IMAGE:40019490, containing frame-shift errors P
BC105606.1 Homo sapiens helicase, lymphoid-specific, mRNA (cDNA clone IMAGE:6725530), partial cds PA
AK314485.1 Homo sapiens cDNA, FLJ95293, Homo sapiens helicase, lymphoid-specific (HELLS), mRNA P
AK308331.1 Homo sapiens cDNA, FLJ98279 P
BC029381.1 Homo sapiens helicase, lymphoid-specific, mRNA (cDNA clone IMAGE:4738004), complete cds PA
BC030963.1 Homo sapiens helicase, lymphoid-specific, mRNA (cDNA clone IMAGE:4109340), complete cds PA
BC031004.1 Homo sapiens helicase, lymphoid-specific, mRNA (cDNA clone IMAGE:4108169), complete cds PA
BC015477.1 Homo sapiens helicase, lymphoid-specific, mRNA (cDNA clone IMAGE:3913594), partial cds PA

EST sequences (10 of 202) [Show all sequences]

BX118860.1 Clone IMAGp998L032639_;_IMAGE:1055762 testis P
CB116399.1 Clone L6ChoCK0-14-B04 liver 5' read
CB133862.1 Clone L14ChoiCK0-9-B03 liver 5' read P
AI240837.1 Clone IMAGE:1848511 mixed 3' read
AI280027.1 Clone IMAGE:1853741 mixed 3' read A
AI281473.1 Clone IMAGE:1967481 lymph node 3' read A
AI377912.1 Clone IMAGE:2091125 mixed 3' read A
AI379075.1 Clone IMAGE:2068889 mixed 3' read
CB215519.1 Clone IMAGE:5937263 uterus 5' read P
AI653115.1 Clone IMAGE:2308407 uncharacterized tissue 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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