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UGID:2724375     UniGene Hs.655057     Homo sapiens (human)   TNRC6A
Trinucleotide repeat containing 6A (TNRC6A)

Human protein-coding gene TNRC6A. Represented by 348 ESTs from 188 cDNA libraries. Corresponds to reference sequence NM_014494.2. [UniGene 2724375 - Hs.655057]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_055309.2 TNRC6A gene product H. sapiens 100.0 1961
XP_510885.3 PREDICTED: trinucleotide repeat-containing gene 6A protein P. troglodytes 99.9 1794
NP_659174.3 Tnrc6a gene product M. musculus 95.7 1895
XP_689365.4 PREDICTED: trinucleotide repeat-containing gene 6C protein-like D. rerio 61.2 432
Other hits (2 of 18) [Show all]SpeciesId(%)Len(aa)
XP_001098013.2 PREDICTED: trinucleotide repeat-containing gene 6A protein isoform 1 M. mulatta 99.5 1952
XP_003916744.1 PREDICTED: trinucleotide repeat-containing gene 6A protein P. anubis 99.0 1903

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; mixed; uterus; ovary; pituitary gland; stomach; skin; pancreas; embryonic tissue; lung; testis; placenta; kidney; connective tissue; thyroid; prostate; intestine; larynx; spleen; uncharacterized tissue; mammary gland; heart; blood; trachea; bladder; thymus; epididymis; lymph; ear; eye; liver; mouth; parathyroid; lymph node; muscle; bone; adrenal gland; vascular; pharynx; nerve; adipose tissue; cervix
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 16
Map position: 16p11.2
UniSTS entry: Chr 16 SHGC-61076
UniSTS entry: Chr 16 MARC_13877-13878:1007496206:1
UniSTS entry: Chr 16 L17913
UniSTS entry: Chr 1 PMC156606P2
UniSTS entry: SHGC-61178
UniSTS entry: Chr 1 sY3084
UniSTS entry: Chr 1 D8S2278
UniSTS entry: Chr 1 GDB:335751
UniSTS entry: Chr 1 L18426
UniSTS entry: Chr 1 D8S2279
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (14)

BC068209.1 Homo sapiens trinucleotide repeat containing 6A, mRNA (cDNA clone IMAGE:6197151) PA
AK001773.1 Homo sapiens cDNA FLJ10911 fis, clone OVARC1000148 P
AB040893.1 Homo sapiens mRNA for KIAA1460 protein, partial cds P
AK025277.1 Homo sapiens cDNA: FLJ21624 fis, clone COL08006 A
AK025696.1 Homo sapiens cDNA: FLJ22043 fis, clone HEP09131 PA
BC024324.1 Homo sapiens trinucleotide repeat containing 6A, mRNA (cDNA clone IMAGE:4427559), partial cds PA
AL713750.1 Homo sapiens mRNA; cDNA DKFZp566M143 (from clone DKFZp566M143) PA
AY035864.1 Homo sapiens GW182 autoantigen (GW1) mRNA, complete cds P
NM_014494.2 Homo sapiens trinucleotide repeat containing 6A (TNRC6A), mRNA PA
AJ492221.1 Homo sapiens mRNA for EDIE protein (KIAA1460 gene) P
AK094542.1 Homo sapiens cDNA FLJ37223 fis, clone BRAMY1000157, highly similar to Trinucleotide repeat-containing gene 6A protein P
AL833757.1 Homo sapiens mRNA; cDNA DKFZp666E117 (from clone DKFZp666E117) PA
AK299905.1 Homo sapiens cDNA FLJ59141 complete cds, highly similar to Trinucleotide repeat-containing gene 6A protein P
U23860.1 Human clone mcag19 chromosome 16 CTG repeat region P

EST sequences (10 of 348) [Show all sequences]

AA910469.1 Clone IMAGE:1505619 mixed 3' read A
AA971667.1 Clone IMAGE:1583626 mixed 3' read
AA985055.1 Clone IMAGE:1577317 spleen 3' read A
AA999988.1 Clone IMAGE:1636558 kidney 3' read A
AI016937.1 Clone IMAGE:1639153 testis 3' read
AI051010.1 Clone IMAGE:1648994 parathyroid 3' read A
R19882.1 Clone IMAGE:34995 brain 5' read
AI052220.1 Clone IMAGE:1675309 mixed 3' read P
AI124929.1 Clone IMAGE:1726455 vascular 3' read
AI126867.1 Clone IMAGE:1707825 heart 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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