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UGID:2477635     UniGene Hs.647011     Homo sapiens (human)   MSH5
MutS homolog 5 (E. coli) (MSH5)

Human protein-coding gene MSH5. Represented by 200 ESTs from 105 cDNA libraries. Corresponds to 5 reference sequences (different isoforms). [UniGene 2477635 - Hs.647011]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_751897.1 MSH5 gene product H. sapiens 100.0 834
XP_001158290.1 PREDICTED: mutS protein homolog 5 isoform 3 P. troglodytes 99.6 833
NP_038628.2 Msh5 gene product M. musculus 92.4 828
Other hits (2 of 28) [Show all]SpeciesId(%)Len(aa)
XP_003897403.1 PREDICTED: mutS protein homolog 5 isoform 1 P. anubis 98.9 833
XP_001105745.1 PREDICTED: mutS protein homolog 5-like isoform 1 M. mulatta 98.8 833

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; uncharacterized tissue; spleen; blood; esophagus; thymus; intestine; embryonic tissue; pituitary gland; liver; prostate; stomach; lymph; uterus; mixed; ovary; pancreas; mouth; lung; skin; kidney; brain; cervix; placenta; muscle; trachea; epididymis; tonsil; salivary gland; ascites; lymph node; eye; parathyroid; bone; bone marrow; mammary gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
Map position: 6p21.3
UniSTS entry: MARC_21497-21498:1032976101:1
UniSTS entry: Chr 6 RH103527
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (14)

AF048986.1 Homo sapiens MutS homolog 5 (MSH5) mRNA, complete cds PA
AF070071.1 Homo sapiens MutS homolog (MSH5) mRNA, complete cds PA
BT007200.1 Homo sapiens mutS homolog 5 (E. coli) mRNA, complete cds P
NM_002441.4 Homo sapiens mutS homolog 5 (E. coli) (MSH5), transcript variant 3, mRNA PA
BC002498.2 Homo sapiens mutS homolog 5 (E. coli), mRNA (cDNA clone MGC:2939 IMAGE:3050903), complete cds PA
BC001358.2 Homo sapiens mutS homolog 5 (E. coli), mRNA (cDNA clone MGC:2043 IMAGE:3050865), complete cds PA
NM_025259.5 Homo sapiens mutS homolog 5 (E. coli) (MSH5), transcript variant 1, mRNA PA
AK304221.1 Homo sapiens cDNA FLJ58885 complete cds, highly similar to MutS protein homolog 5 P
AK303129.1 Homo sapiens cDNA FLJ54211 complete cds, highly similar to MutS protein homolog 5 P
NR_037846.1 Homo sapiens MSH5-SAPCD1 readthrough (non-protein coding) (MSH5-SAPCD1), non-coding RNA PA
BC041031.1 Homo sapiens mutS homolog 5 (E. coli), mRNA (cDNA clone MGC:52249 IMAGE:4591368), complete cds PA
NM_172166.3 Homo sapiens mutS homolog 5 (E. coli) (MSH5), transcript variant 4, mRNA PA
NM_172165.3 Homo sapiens mutS homolog 5 (E. coli) (MSH5), transcript variant 2, mRNA PA
AF034759.1 Homo sapiens MutS homolog (MSH5) mRNA, complete cds P

EST sequences (10 of 200) [Show all sequences]

AA969618.1 Clone IMAGE:1579151 mixed 3' read A
AA969902.1 Clone IMAGE:1581142 mixed 3' read P
AI027803.1 Clone IMAGE:1646258 parathyroid 3' read A
BX093796.1 Clone IMAGp998H034177_;_IMAGE:1646258 parathyroid P
AI261444.1 Clone IMAGE:1868397 kidney 3' read A
CB155199.1 Clone B2N807043-13-D07 brain 5' read P
CB132057.1 Clone L12JSHC0-3-A09 liver 5' read P
AI243848.1 Clone IMAGE:1854188 mixed 3' read A
AI247196.1 Clone IMAGE:1998782 stomach 3' read A
AI383438.1 Clone IMAGE:2087452 mixed 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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