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UGID:2394421     UniGene Hs.645344     Homo sapiens (human)   RPL13AP5
Ribosomal protein L13a pseudogene 5 (RPL13AP5)

Human pseudo gene RPL13AP5. Represented by 2586 ESTs from 496 cDNA libraries. Corresponds to reference sequence NR_026712.1. [UniGene 2394421 - Hs.645344]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_003952917.1 PREDICTED: 60S ribosomal protein L13a-like P. troglodytes 100.0 207
NP_001182348.1 ribosomal protein L13a M. mulatta 100.0 202
XP_003915944.1 PREDICTED: 60S ribosomal protein L13a isoform 1 P. anubis 100.0 202
NP_036555.1 RPL13A gene product H. sapiens 100.0 202
XP_003432774.1 PREDICTED: 60S ribosomal protein L13a C. lupus familiaris 100.0 202
XP_001491926.1 PREDICTED: 60S ribosomal protein L13a-like E. caballus 100.0 202
NP_001230998.1 RPL13A gene product S. scrofa 100.0 202
NP_001070466.1 RPL13A gene product B. taurus 100.0 202
XP_002723961.1 PREDICTED: ribosomal protein L13a-like O. cuniculus 100.0 116
NP_775462.2 Rpl13a gene product R. norvegicus 99.5 202
NP_033464.2 Rpl13a gene product M. musculus 99.0 202
NP_001080130.1 ribosomal protein L13a X. laevis 97.2 212
NP_997949.1 rpl13a gene product D. rerio 95.1 204
NP_193053.1 60S ribosomal protein L13a-3 A. thaliana 73.0 204
XP_001692909.1 ribosomal protein L13a, component of cytosolic 80S ribosome and 60S large subunit C. reinhardtii 72.3 184
NP_649560.1 ribosomal protein L13A, isoform B D. melanogaster 71.4 202
XP_961587.1 60S ribosomal protein L16 N. crassa 70.0 199
NP_012133.1 ribosomal 60S subunit protein L16A S. cerevisiae 68.7 198
NP_497721.1 Protein RPL-16 C. elegans 62.7 201
Other hits (2 of 51) [Show all]SpeciesId(%)Len(aa)
XP_001363221.1 PREDICTED: 60S ribosomal protein L13a-like M. domestica 99.0 202
XP_004011713.1 PREDICTED: 60S ribosomal protein L13a-like O. aries 98.5 202

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: prostate; lung; pancreas; brain; intestine; skin; liver; eye; uncharacterized tissue; uterus; ovary; mixed; lymph; kidney; embryonic tissue; placenta; bone; muscle; blood; connective tissue; testis; mammary gland; lymph node; cervix; tonsil; vascular; bone marrow; umbilical cord; stomach; pharynx; heart; parathyroid; adipose tissue; bladder; adrenal gland; thyroid; spleen; larynx; pituitary gland; thymus; salivary gland; ear; nerve; epididymis; pineal gland; esophagus; ascites
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 10
Map position: 10q24.1
UniSTS entry: Chr 11 RH27395
UniSTS entry: Chr 19 D19S1021 [Map Viewer]
UniSTS entry: Chr 19 RH38886
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (1)

NR_026712.1 Homo sapiens ribosomal protein L13a pseudogene 5 (RPL13AP5), non-coding RNA PA

EST sequences (10 of 2586) [Show all sequences]

AA954875.1 Clone IMAGE:1576235 intestine 3' read P
AA836788.1 Clone IMAGE:1422620 kidney PA
AA862786.1 Clone IMAGE:1469175 uncharacterized tissue 3' read P
AA865427.1 Clone IMAGE:1459232 kidney 3' read PA
AA961414.1 Clone IMAGE:1597871 uncharacterized tissue 3' read PA
AA961578.1 Clone IMAGE:1592644 kidney 3' read P
AA961782.1 Clone IMAGE:1598381 uncharacterized tissue 3' read PA
AA968568.1 Clone IMAGE:1592202 kidney 3' read PA
AA970804.1 Clone IMAGE:1576491 intestine 3' read P
AA971177.1 Clone IMAGE:1575407 kidney 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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