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UGID:2138622     UniGene Hs.631728     Homo sapiens (human)   RPL13AP20
Ribosomal protein L13a pseudogene 20 (RPL13AP20)

Human pseudo gene RPL13AP20. Represented by 10 ESTs from 9 cDNA libraries. Corresponds to reference sequence NR_003932.2. [UniGene 2138622 - Hs.631728]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_002723961.1 PREDICTED: ribosomal protein L13a-like O. cuniculus 95.7 116
XP_003952166.1 PREDICTED: 60S ribosomal protein L13a-like P. troglodytes 95.6 202
NP_036555.1 RPL13A gene product H. sapiens 94.6 202
NP_033464.2 Rpl13a gene product M. musculus 90.6 202
NP_001080130.1 ribosomal protein L13a X. laevis 84.9 198
NP_997949.1 rpl13a gene product D. rerio 82.9 198
XP_961587.1 60S ribosomal protein L16 N. crassa 58.0 195
XP_001692909.1 ribosomal protein L13a, component of cytosolic 80S ribosome and 60S large subunit C. reinhardtii 57.1 182
NP_193053.1 60S ribosomal protein L13a-3 A. thaliana 55.3 190
NP_014330.1 ribosomal 60S subunit protein L16B S. cerevisiae 53.6 192
NP_649560.1 ribosomal protein L13A, isoform B D. melanogaster 53.6 196
NP_497721.1 Protein RPL-16 C. elegans 50.3 195
Other hits (2 of 58) [Show all]SpeciesId(%)Len(aa)
NP_001182348.1 ribosomal protein L13a M. mulatta 94.1 202
XP_003915944.1 PREDICTED: 60S ribosomal protein L13a isoform 1 P. anubis 94.1 202

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; bone marrow; skin; vascular; prostate; mammary gland; thyroid; cervix
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 12
Map position: 12p13.1
UniSTS entry: Chr 19 D19S1021 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (1)

NR_003932.2 Homo sapiens ribosomal protein L13a pseudogene 20 (RPL13AP20), non-coding RNA PA

EST sequences (10)

AI310179.1 Clone IMAGE:2057897 mammary gland 3' read
AI371661.1 Clone IMAGE:2060086 brain 3' read A
AI612090.1 Clone IMAGE:2245552 bone marrow 3' read
AI954344.1 Clone IMAGE:2551513 skin 3' read A
D57184.1 Clone GEN-275E12 vascular 5' read
D54038.1 Clone GEN-126F02 brain 5' read
EC464208.1 prostate
EC464627.1 prostate
BG994922.1 thyroid
BI261181.1 Clone IMAGE:5107514 cervix 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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