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UGID:2087156     UniGene Hs.618145     Homo sapiens (human)   CIRBP
Cold inducible RNA binding protein (CIRBP)

Human protein-coding gene CIRBP. Represented by 2009 ESTs from 492 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 2087156 - Hs.618145]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001248245.1 cold-inducible RNA-binding protein M. mulatta 100.0 171
NP_001271.1 CIRBP gene product H. sapiens 100.0 171
XP_003914625.1 PREDICTED: cold-inducible RNA-binding protein P. anubis 99.5 198
NP_031731.1 cold-inducible RNA-binding protein M. musculus 98.3 171
NP_001079794.1 cold-inducible RNA-binding protein B X. laevis 89.2 165
NP_956311.1 cirbp gene product D. rerio 72.3 183
Other hits (2 of 20) [Show all]SpeciesId(%)Len(aa)
XP_868600.1 PREDICTED: cold-inducible RNA-binding protein isoform 2 C. lupus familiaris 99.5 184
XP_004008825.1 PREDICTED: cold-inducible RNA-binding protein O. aries 99.4 170

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; embryonic tissue; thymus; lung; eye; pancreas; placenta; uncharacterized tissue; testis; uterus; intestine; prostate; spleen; mixed; connective tissue; kidney; skin; lymph node; mammary gland; mouth; bone; blood; ovary; stomach; thyroid; bladder; trachea; heart; muscle; cervix; nerve; bone marrow; liver; esophagus; tonsil; parathyroid; pituitary gland; ear; lymph; umbilical cord; vascular; epididymis; pharynx; salivary gland; adrenal gland; ascites; ganglia; larynx; adipose tissue; pineal gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 19
Map position: 19p13.3
UniSTS entry: Chr 19 RH11815
UniSTS entry: Chr 19 D19S683E
UniSTS entry: Chr 19 IB1264 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (17)

BT007210.1 Homo sapiens cold inducible RNA binding protein mRNA, complete cds P
AK128423.1 Homo sapiens cDNA FLJ46566 fis, clone THYMU3040829, moderately similar to Cold-inducible RNA-binding protein
NM_001280.2 Homo sapiens cold inducible RNA binding protein (CIRBP), transcript variant 1, mRNA PA
AL133636.1 Homo sapiens mRNA; cDNA DKFZp434H2418 (from clone DKFZp434H2418) A
D78134.1 Homo sapiens mRNA for CIRP, complete cds P
BC000901.1 Homo sapiens cold inducible RNA binding protein, mRNA (cDNA clone MGC:5232 IMAGE:2900585), complete cds PA
BC000403.2 Homo sapiens cold inducible RNA binding protein, mRNA (cDNA clone MGC:8563 IMAGE:2822968), complete cds PA
AK311601.1 Homo sapiens cDNA, FLJ18643 P
AK095781.1 Homo sapiens cDNA FLJ38462 fis, clone FEBRA2021032, weakly similar to COLD-INDUCIBLE RNA-BINDING PROTEIN P
AK094781.1 Homo sapiens cDNA FLJ37462 fis, clone BRAWH2011343, highly similar to COLD-INDUCIBLE RNA-BINDING PROTEIN P
AK304470.1 Homo sapiens cDNA FLJ52850 complete cds, moderately similar to Cold-inducible RNA-binding protein P
AK304185.1 Homo sapiens cDNA FLJ52834 complete cds, moderately similar to Cold-inducible RNA-binding protein P
AB451348.1 Homo sapiens CIRBP mRNA for cold inducible RNA binding protein, partial cds, clone: FLJ08010AAAF P
AB451225.1 Homo sapiens CIRBP mRNA for cold inducible RNA binding protein, complete cds, clone: FLJ08010AAAN P
NR_023312.1 Homo sapiens cold inducible RNA binding protein (CIRBP), transcript variant 2, non-coding RNA PA
NR_023313.1 Homo sapiens cold inducible RNA binding protein (CIRBP), transcript variant 3, non-coding RNA PA
AF021336.1 Homo sapiens DNA damage-inducible RNA binding protein (A18hnRNP) mRNA, complete cds P

EST sequences (10 of 2009) [Show all sequences]

AA863484.1 Clone IMAGE:1469414 uncharacterized tissue 3' read A
AA975022.1 Clone IMAGE:1561000 mixed 3' read A
AA992537.1 Clone IMAGE:1621981 embryonic tissue 3' read
AA993043.1 Clone IMAGE:1624263 embryonic tissue 3' read A
AA887378.1 Clone IMAGE:1502067 kidney 3' read A
AI016590.1 Clone IMAGE:1622963 embryonic tissue 3' read A
T05819.1 Clone HFBDG80 brain
AI055862.1 Clone IMAGE:1750179 brain 3' read
R21254.1 Clone IMAGE:130319 placenta 3' read A
AI092495.1 Clone IMAGE:1693026 heart 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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