NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
Finding cDNAs

UGID:2074164     UniGene Hs.605153     Homo sapiens (human)   TCF4
Transcription factor 4 (TCF4)

Human protein-coding gene TCF4. Represented by 1428 ESTs from 290 cDNA libraries. Corresponds to 12 reference sequences (different isoforms). [UniGene 2074164 - Hs.605153]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001230155.1 TCF4 gene product H. sapiens 100.0 772
XP_001084466.2 PREDICTED: transcription factor 4 M. mulatta 100.0 666
XP_002713591.1 PREDICTED: transcription factor 4 O. cuniculus 99.7 646
NP_001003268.1 TCF4 gene product C. lupus familiaris 99.5 641
NP_038713.1 Tcf4 gene product M. musculus 99.0 669
NP_001184193.1 uncharacterized protein LOC100505424 X. laevis 92.8 606
NP_001166154.1 zgc:113045 gene product D. rerio 57.8 646
NP_477189.1 daughterless, isoform A D. melanogaster 48.1 183
Other hits (2 of 29) [Show all]SpeciesId(%)Len(aa)
XP_003914452.1 PREDICTED: LOW QUALITY PROTEIN: transcription factor 4 P. anubis 99.5 762
XP_003315984.1 PREDICTED: LOW QUALITY PROTEIN: transcription factor 4 P. troglodytes 99.4 802

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: bone; brain; uncharacterized tissue; lung; mixed; testis; embryonic tissue; mouth; eye; kidney; vascular; uterus; umbilical cord; placenta; pancreas; pituitary gland; heart; lymph node; pharynx; bladder; bone marrow; intestine; adrenal gland; stomach; connective tissue; blood; adipose tissue; thymus; skin; mammary gland; liver; salivary gland; spleen; prostate; ovary; muscle; thyroid; trachea; ascites; ganglia; esophagus; lymph; nerve; pineal gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 18
Map position: 18q21.1
UniSTS entry: Chr 18 RH12470 [Map Viewer]
UniSTS entry: Chr 18 WI-21824 [Map Viewer]
UniSTS entry: Chr 18 SHGC-64012
UniSTS entry: Tcf4
UniSTS entry: Chr 18 RH92749
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (53)

AK122765.1 Homo sapiens cDNA FLJ16304 fis, clone PUAEN2003408, highly similar to TRANSCRIPTION FACTOR 4 P
NM_003199.2 Homo sapiens transcription factor 4 (TCF4), transcript variant 2, mRNA P
AB209741.1 Homo sapiens mRNA for transcription factor 4 isoform b variant protein P
AK021980.1 Homo sapiens cDNA FLJ11918 fis, clone HEMBB1000272
AK026674.1 Homo sapiens cDNA: FLJ23021 fis, clone LNG01014, highly similar to HUMSEF21B Human SEF2-1B protein (SEF2-1B) mRNA PA
M74718.1 Human SEF2-1A protein (SEF2-1A) mRNA, 5' end P
M74719.1 Human SEF2-1B protein (SEF2-1B) mRNA, complete cds P
BC125085.1 Homo sapiens transcription factor 4, mRNA (cDNA clone MGC:149724 IMAGE:40117798), complete cds P
BC125084.1 Homo sapiens transcription factor 4, mRNA (cDNA clone MGC:149723 IMAGE:40117795), complete cds P
NM_001083962.1 Homo sapiens transcription factor 4 (TCF4), transcript variant 1, mRNA P
AK315074.1 Homo sapiens cDNA, FLJ96028 P
X52079.1 H.sapiens transcription factor (ITF-2) mRNA, 3' end P
BC031056.1 Homo sapiens transcription factor 4, mRNA (cDNA clone IMAGE:5273193) PA
AK096862.1 Homo sapiens cDNA FLJ39543 fis, clone PUAEN2008939, highly similar to TRANSCRIPTION FACTOR 4 P
AK095066.1 Homo sapiens cDNA FLJ37747 fis, clone BRHIP2022986
AK095041.1 Homo sapiens cDNA FLJ37722 fis, clone BRHIP2019186, highly similar to TRANSCRIPTION FACTOR 4 P
AK300636.1 Homo sapiens cDNA FLJ53660 complete cds, highly similar to Transcription factor 4 P
AK300038.1 Homo sapiens cDNA FLJ54545 complete cds, highly similar to Transcription factor 4 P
M74720.1 Human SEF2-1D protein (SEF2-1D) mRNA, partial cds
AK316165.1 Homo sapiens cDNA, FLJ79064 complete cds, highly similar to Transcription factor 4 PA
AK301144.1 Homo sapiens cDNA FLJ58695 complete cds, highly similar to Transcription factor 4 P
AK300612.1 Homo sapiens cDNA FLJ61772 complete cds, highly similar to Transcription factor 4 PA
AK299169.1 Homo sapiens cDNA FLJ58684 complete cds, highly similar to Transcription factor 4 P
FR748223.1 Homo sapiens mRNA for transcription factor 4 isoform I- (TCF4 gene) P
FR748222.1 Homo sapiens mRNA for transcription factor 4 isoform H- (TCF4 gene) P
FR748221.1 Homo sapiens mRNA for transcription factor 4 isoform A- (TCF4 gene) P
FR748220.1 Homo sapiens mRNA for transcription factor 4 isoform A+ (TCF4 gene) P
FR748219.1 Homo sapiens mRNA for transcription factor 4 isoform G- (TCF4 gene) P
FR748218.1 Homo sapiens mRNA for transcription factor 4 isoform D- (TCF4 gene) P
FR748217.1 Homo sapiens mRNA for transcription factor 4 isoform F- (TCF4 gene) P
FR748216.1 Homo sapiens mRNA for transcription factor 4 isoform E- (TCF4 gene) P
FR748215.1 Homo sapiens mRNA for transcription factor 4 isoform C- delta (TCF4 gene) P
FR748214.1 Homo sapiens mRNA for transcription factor 4 isoform C- (TCF4 gene) P
FR748213.1 Homo sapiens mRNA for transcription factor 4 isoform B- delta (TCF4 gene) P
FR748212.1 Homo sapiens mRNA for transcription factor 4 isoform B+ delta (TCF4 gene) P
FR748211.1 Homo sapiens mRNA for transcription factor 4 isoform B- (TCF4 gene) P
FR748210.1 Homo sapiens mRNA for transcription factor 4 isoform B+ (TCF4 gene) P
FR748209.1 Homo sapiens partial mRNA for transcription factor 4 isoform D (TCF4 gene) P
FR748208.1 Homo sapiens partial mRNA for transcription factor 4 isoform D (TCF4 gene) P
FR748207.1 Homo sapiens partial mRNA for transcription factor 4 isoform R (TCF4 gene) P
FR748205.1 Homo sapiens partial mRNA for transcription factor 4 isoform B (TCF4 gene) P
FR748203.1 Homo sapiens partial mRNA for transcription factor 4 isoform L (TCF4 gene)
FR748202.1 Homo sapiens partial mRNA for transcription factor 4 isoform M (TCF4 gene)
NM_001243236.1 Homo sapiens transcription factor 4 (TCF4), transcript variant 12, mRNA P
NM_001243235.1 Homo sapiens transcription factor 4 (TCF4), transcript variant 11, mRNA P
NM_001243234.1 Homo sapiens transcription factor 4 (TCF4), transcript variant 10, mRNA P
NM_001243233.1 Homo sapiens transcription factor 4 (TCF4), transcript variant 9, mRNA PA
NM_001243232.1 Homo sapiens transcription factor 4 (TCF4), transcript variant 8, mRNA P
NM_001243231.1 Homo sapiens transcription factor 4 (TCF4), transcript variant 7, mRNA P
NM_001243230.1 Homo sapiens transcription factor 4 (TCF4), transcript variant 6, mRNA P
NM_001243228.1 Homo sapiens transcription factor 4 (TCF4), transcript variant 5, mRNA P
NM_001243227.1 Homo sapiens transcription factor 4 (TCF4), transcript variant 4, mRNA P
NM_001243226.1 Homo sapiens transcription factor 4 (TCF4), transcript variant 3, mRNA P

EST sequences (10 of 1428) [Show all sequences]

AA960938.1 Clone IMAGE:1569700 lung 3' read
AA961401.1 Clone IMAGE:1597854 uncharacterized tissue 3' read
R14366.1 Clone IMAGE:28689 brain 5' read
AA961941.1 Clone IMAGE:1593778 kidney 3' read
AA974683.1 Clone IMAGE:1578225 mixed 3' read
AA984877.1 Clone IMAGE:1576624 spleen 3' read A
AA987959.1 Clone IMAGE:1603442 lung 3' read
AA989370.1 Clone IMAGE:1607104 mammary gland 3' read P
R16299.1 Clone IMAGE:30302 brain 5' read P
AA999727.1 Clone IMAGE:1636325 kidney 3' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help