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UGID:2060656     UniGene Hs.591645     Homo sapiens (human)   COL4A4
Collagen, type IV, alpha 4 (COL4A4)

Human protein-coding gene COL4A4. Represented by 83 ESTs from 50 cDNA libraries. Corresponds to reference sequence NM_000092.4. [UniGene 2060656 - Hs.591645]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_000083.3 COL4A4 gene product H. sapiens 100.0 1689
NP_031761.1 Col4a4 gene product M. musculus 80.3 1681
NP_723044.1 collagen type IV, isoform A D. melanogaster 51.5 483
NP_001116702.1 collagen alpha-5(IV) chain precursor D. rerio 49.9 1626
NP_510664.1 Protein LET-2, isoform a C. elegans 49.6 1738
NP_001081258.1 collagen alpha-1(II) chain precursor X. laevis 45.4 1117
Other hits (2 of 42) [Show all]SpeciesId(%)Len(aa)
XP_516128.2 PREDICTED: collagen alpha-4(IV) chain P. troglodytes 98.8 1689
XP_003908072.1 PREDICTED: collagen alpha-4(IV) chain P. anubis 96.6 1691

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: kidney; eye; uncharacterized tissue; liver; mixed; cervix; adrenal gland; thyroid; lung; muscle; stomach; pituitary gland; pharynx; prostate; pancreas; spleen; testis; trachea; uterus; connective tissue; lymph node; placenta; thymus
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2q35-q37
UniSTS entry: Chr 2 SHGC-33680 [Map Viewer]
UniSTS entry: Chr 2 RH70415 [Map Viewer]
UniSTS entry: Chr 2 WI-18252 [Map Viewer]
UniSTS entry: Chr 2 WI-7328
UniSTS entry: Chr 2 COL4A4_544.2
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (4)

NM_000092.4 Homo sapiens collagen, type IV, alpha 4 (COL4A4), mRNA P
BC065843.1 Homo sapiens cDNA clone IMAGE:30367357, partial cds A
D17391.1 Homo sapiens mRNA for alpha 4(IV) collagen, partial cds P
X81053.1 H.sapiens mRNA for collagen type IV alpha 4 chain P

EST sequences (10 of 83) [Show all sequences]

BX094848.1 Clone IMAGp998F104997_;_IMAGE:2030601 kidney P
BX100928.1 Clone IMAGp998H13461_;_IMAGE:229692 mixed
AI244041.1 Clone IMAGE:1864035 kidney 3' read
AI373628.1 Clone IMAGE:2030601 kidney 3' read A
AI572549.1 Clone IMAGE:2089121 mixed 3' read
AI631820.1 Clone IMAGE:2300194 kidney 3' read
AI679134.1 Clone IMAGE:2255565 stomach 3' read A
AI679708.1 Clone IMAGE:2255949 stomach 3' read
AI758389.1 Clone IMAGE:2284248 kidney 3' read
AI758931.1 Clone IMAGE:2285734 kidney 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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