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UGID:2060493     UniGene Hs.591482     Homo sapiens (human)   LYSMD1
LysM, putative peptidoglycan-binding, domain containing 1 (LYSMD1)

Human protein-coding gene LYSMD1. Represented by 29 ESTs from 26 cDNA libraries. EST representation biased toward infant. Corresponds to 2 reference sequences (different isoforms). [UniGene 2060493 - Hs.591482]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_997716.1 LYSMD1 gene product H. sapiens 100.0 226
NP_694761.1 Lysmd1 gene product M. musculus 84.1 225
NP_001070218.1 lysmd1 gene product D. rerio 48.8 200
NP_001088735.1 lysM and putative peptidoglycan-binding domain-containing protein 1 X. laevis 45.6 203
Other hits (2 of 14) [Show all]SpeciesId(%)Len(aa)
XP_001171513.2 PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 1 isoform 1 P. troglodytes 99.1 226
NP_001162416.1 lysM and putative peptidoglycan-binding domain-containing protein 1 P. anubis 96.9 226

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: infant [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; mouth; mammary gland; brain; lung; testis; uncharacterized tissue; prostate; adrenal gland; kidney; thymus; blood; mixed; uterus; skin
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1q21.3
UniSTS entry: Chr 1 AB062973
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

BX647911.1 Homo sapiens mRNA; cDNA DKFZp686L0312 (from clone DKFZp686L0312) PA
BC031649.1 Homo sapiens LysM, putative peptidoglycan-binding, domain containing 1, mRNA (cDNA clone MGC:35223 IMAGE:5172124), complete cds PA
AL122088.1 Homo sapiens mRNA; cDNA DKFZp564C0671 (from clone DKFZp564C0671) PA
NM_212551.4 Homo sapiens LysM, putative peptidoglycan-binding, domain containing 1 (LYSMD1), transcript variant 1, mRNA PA
AK298814.1 Homo sapiens cDNA FLJ52686 complete cds, highly similar to Homo sapiens LysM, peptidoglycan-binding, domain containing 1 (LYSMD1), mRNA P
AK298706.1 Homo sapiens cDNA FLJ57075 complete cds, highly similar to Homo sapiens LysM, peptidoglycan-binding, domain containing 1 (LYSMD1), mRNA P
NM_001136543.1 Homo sapiens LysM, putative peptidoglycan-binding, domain containing 1 (LYSMD1), transcript variant 2, mRNA PA
AY037156.1 Homo sapiens hypothetical protein SB145 mRNA, complete cds PA

EST sequences (10 of 29) [Show all sequences]

AI217830.1 Clone IMAGE:1755796 testis 3' read A
AI474548.1 Clone IMAGE:2118880 prostate 3' read A
AI658980.1 Clone IMAGE:2251857 prostate 3' read A
BX355366.2 Clone CS0DD006YA23 uncharacterized tissue 5' read
BX372977.2 Clone CS0DD006YA23 uncharacterized tissue 3' read
BX361994.2 Clone CS0DJ008YG01 blood 5' read
CD359960.1 Clone IMAGE:30388248 testis 5' read P
AW015147.1 Clone IMAGE:2711157 uncharacterized tissue 3' read A
CN478585.1 Clone UI-CF-FN0-aeo-e-15-0-UI lung 3' read A
CN358428.1 embryonic tissue 5' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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