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UGID:1850243     UniGene Hs.577256     Homo sapiens (human)   USP47
Ubiquitin specific peptidase 47 (USP47)

Human protein-coding gene USP47. Represented by 406 ESTs from 237 cDNA libraries. Corresponds to reference sequence NM_017944.3. [UniGene 1850243 - Hs.577256]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_060414.3 USP47 gene product H. sapiens 100.0 1286
XP_001098399.1 PREDICTED: ubiquitin carboxyl-terminal hydrolase 47 isoform 1 M. mulatta 99.9 1286
XP_003910259.1 PREDICTED: ubiquitin carboxyl-terminal hydrolase 47 P. anubis 99.9 1286
XP_001171056.1 PREDICTED: ubiquitin carboxyl-terminal hydrolase 47 isoform 4 P. troglodytes 99.9 1286
NP_598519.2 Usp47 gene product M. musculus 97.1 1355
NP_001093619.1 usp47 gene product D. rerio 88.9 325
NP_001088634.1 ubiquitin carboxyl-terminal hydrolase 47 X. laevis 87.8 1349
NP_996001.2 Ubiquitin-specific protease 64E, isoform D D. melanogaster 62.1 562
NP_495686.2 Protein T05H10.1 C. elegans 56.4 436
Other hits (2 of 33) [Show all]SpeciesId(%)Len(aa)
XP_003433046.1 PREDICTED: ubiquitin carboxyl-terminal hydrolase 47 C. lupus familiaris 99.2 1370
XP_003123025.3 PREDICTED: ubiquitin carboxyl-terminal hydrolase 47, partial S. scrofa 99.2 1078

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; kidney; testis; bone marrow; vascular; eye; skin; embryonic tissue; uterus; lung; mixed; pituitary gland; uncharacterized tissue; blood; pharynx; ear; placenta; prostate; lymph node; pancreas; liver; muscle; intestine; mouth; connective tissue; ovary; stomach; mammary gland; trachea; adrenal gland; thymus; esophagus; heart; cervix; bladder; salivary gland; larynx; spinal cord; ascites; thyroid; nerve; ganglia; umbilical cord; bone; spleen
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 11
Map position: 11p15.3
UniSTS entry: Chr 11 D11S4722
UniSTS entry: Chr 11 RH99064
UniSTS entry: Chr 11 RH103143
UniSTS entry: Chr 11 STS-AA018552 [Map Viewer]
UniSTS entry: Chr 11 RH78516 [Map Viewer]
UniSTS entry: Chr 11 D11S4695 [Map Viewer]
UniSTS entry: Chr 11 D11S4417 [Map Viewer]
UniSTS entry: Chr 11 A008Y47 [Map Viewer]
UniSTS entry: Chr 11 USP47__5050
UniSTS entry: Chr 3 D3S2893E
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (17)

BC047044.1 Homo sapiens ubiquitin specific peptidase 47, mRNA (cDNA clone IMAGE:5575723), partial cds PA
AK127264.1 Homo sapiens cDNA FLJ45331 fis, clone BRHIP3007223, highly similar to Ubiquitin carboxyl-terminal hydrolase 47 (EC 3.1.2.15) P
AK000734.1 Homo sapiens cDNA FLJ20727 fis, clone HEP13238 P
BC071559.1 Homo sapiens cDNA clone IMAGE:4815410, containing frame-shift errors PA
NM_017944.3 Homo sapiens ubiquitin specific peptidase 47 (USP47), mRNA P
AB073355.1 Homo sapiens primary neuroblastoma cDNA, clone:Nbla10070, full insert sequence
BC000226.1 Homo sapiens ubiquitin specific peptidase 47, mRNA (cDNA clone IMAGE:3350895), complete cds PA
AF059318.1 Homo sapiens My002 protein mRNA, complete cds P
AK225358.1 Homo sapiens mRNA for ubiquitin specific protease 47 variant, clone: HEP13238 PA
AK027362.1 Homo sapiens cDNA FLJ14456 fis, clone HEMBB1001915, moderately similar to UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 64E (EC 3.1.2.15) P
AK027283.1 Homo sapiens cDNA FLJ14377 fis, clone HEMBA1001750 PA
AK074076.1 Homo sapiens mRNA for FLJ00147 protein P
AK093714.1 Homo sapiens cDNA FLJ36395 fis, clone THYMU2009338 P
AK092290.1 Homo sapiens cDNA FLJ34971 fis, clone NTONG2005373, highly similar to Ubiquitin carboxyl-terminal hydrolase 47 (EC 3.1.2.15) P
AL832991.2 Homo sapiens mRNA; cDNA DKFZp666K033 (from clone DKFZp666K033) PA
BC030562.1 Homo sapiens ubiquitin specific peptidase 47, mRNA (cDNA clone IMAGE:4499200) PA
BC017795.1 Homo sapiens ubiquitin specific peptidase 47, mRNA (cDNA clone IMAGE:4672711), partial cds PA

EST sequences (10 of 406) [Show all sequences]

AI017928.1 Clone IMAGE:1629090 mixed 3' read
AA909662.1 Clone IMAGE:1544146 mixed 3' read A
AI079485.1 Clone IMAGE:1677747 mixed 3' read
R21877.1 Clone IMAGE:130482 placenta 3' read A
AI093716.1 Clone IMAGE:1688028 mixed 3' read
AI123715.1 Clone IMAGE:1566395 mixed 3' read A
AI126428.1 Clone IMAGE:1735563 testis 3' read A
AI139897.1 Clone IMAGE:1737875 testis 3' read
CB052865.1 Clone IMAGE:3290625 uncharacterized tissue 5' read
AI148656.1 Clone IMAGE:1714841 placenta 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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