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UGID:1848769     UniGene Hs.575782     Homo sapiens (human)   ARID4B
AT rich interactive domain 4B (RBP1-like) (ARID4B)

Human protein-coding gene ARID4B. Represented by 369 ESTs from 189 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 1848769 - Hs.575782]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_057458.4 ARID4B gene product H. sapiens 100.0 1311
XP_001154355.2 PREDICTED: AT-rich interactive domain-containing protein 4B isoform 4 P. troglodytes 99.9 1312
XP_001110827.2 PREDICTED: AT-rich interactive domain-containing protein 4B-like M. mulatta 99.5 1274
NP_919238.1 Arid4b gene product M. musculus 94.9 1313
NP_001090096.1 AT rich interactive domain 4A (RBP1-like) X. laevis 74.3 327
XP_003199806.1 PREDICTED: AT-rich interactive domain-containing protein 4B-like D. rerio 67.0 1216
NP_001097025.1 CG34422, isoform B D. melanogaster 51.5 394
Other hits (2 of 30) [Show all]SpeciesId(%)Len(aa)
XP_001491659.2 PREDICTED: AT-rich interactive domain-containing protein 4B E. caballus 98.3 1308
XP_003429458.1 PREDICTED: AT-rich interactive domain-containing protein 4B-like, partial O. anatinus 98.1 157

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; uncharacterized tissue; mammary gland; testis; mixed; thymus; lung; uterus; heart; ovary; placenta; vascular; mouth; connective tissue; blood; lymph node; kidney; pancreas; liver; embryonic tissue; muscle; pharynx; intestine; eye; parathyroid; skin; prostate; pituitary gland; stomach; adrenal gland; spleen; trachea; bone marrow; lymph; ear; cervix; bone; thyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1q42.1-q43
UniSTS entry: Chr 1 D1S3341 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (18)

BC048959.1 Homo sapiens AT rich interactive domain 4B (RBP1-like), mRNA (cDNA clone IMAGE:5261610), partial cds PA
AY220790.1 Homo sapiens SIN3A-associated protein 180 mRNA, complete cds P
BX648820.1 Homo sapiens mRNA; cDNA DKFZp313M2420 (from clone DKFZp313M2420) PA
BC062536.1 Homo sapiens AT rich interactive domain 4B (RBP1-like), mRNA (cDNA clone IMAGE:5014918), partial cds PA
AL133594.1 Homo sapiens mRNA; cDNA DKFZp434P249 (from clone DKFZp434P249); partial cds PA
AF227899.1 Homo sapiens breast carcinoma-associated antigen isoform I mRNA, partial cds PA
AF208045.2 Homo sapiens breast cancer-associated antigen BRCAA1 (BRCAA1) mRNA, complete cds PA
NM_016374.5 Homo sapiens AT rich interactive domain 4B (RBP1-like) (ARID4B), transcript variant 1, mRNA P
AF083249.1 Homo sapiens Rb binding protein homolog mRNA, partial cds P
AF214114.2 Homo sapiens retinoblastoma-binding protein 1-like 1 (RBBP1L1) mRNA, complete cds PA
AB210032.1 Homo sapiens mRNA for ARID4B variant protein, partial cds, clone: hh11923 P
AK023144.1 Homo sapiens cDNA FLJ13082 fis, clone NT2RP3002056, weakly similar to RETINOBLASTOMA BINDING PROTEIN 1 P
BC104632.1 Homo sapiens AT rich interactive domain 4B (RBP1-like), mRNA (cDNA clone IMAGE:4592624), partial cds PA
NM_031371.3 Homo sapiens AT rich interactive domain 4B (RBP1-like) (ARID4B), transcript variant 2, mRNA P
BC130418.1 Homo sapiens AT rich interactive domain 4B (RBP1-like), mRNA (cDNA clone MGC:163290 IMAGE:40146449), complete cds P
BC017800.1 Homo sapiens AT rich interactive domain 4B (RBP1-like), mRNA (cDNA clone IMAGE:4663973), partial cds PA
BC143719.1 Homo sapiens cDNA clone IMAGE:9052233, containing frame-shift errors P
NM_001206794.1 Homo sapiens AT rich interactive domain 4B (RBP1-like) (ARID4B), transcript variant 3, mRNA PA

EST sequences (10 of 369) [Show all sequences]

R14337.1 Clone IMAGE:28436 brain 5' read
AA905198.1 Clone IMAGE:1507402 mixed 3' read A
AA907555.1 Clone IMAGE:1540513 mixed 3' read A
AI017851.1 Clone IMAGE:1636751 kidney 3' read P
AI039475.1 Clone IMAGE:1658865 embryonic tissue 3' read A
AI040842.1 Clone IMAGE:1647534 parathyroid 3' read P
AI051476.1 Clone IMAGE:1648266 parathyroid 3' read
AI055998.1 Clone IMAGE:1648534 parathyroid 3' read
R20183.1 Clone IMAGE:34227 brain 5' read P
AI079824.1 Clone IMAGE:1659731 embryonic tissue 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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