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UGID:1842818     UniGene Hs.569831     Homo sapiens (human)   TNRC6C
Trinucleotide repeat containing 6C (TNRC6C)

Human protein-coding gene TNRC6C. Represented by 246 ESTs from 124 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 1842818 - Hs.569831]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001136112.1 TNRC6C gene product H. sapiens 100.0 1725
XP_001144739.2 PREDICTED: LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 6C protein P. troglodytes 99.8 1930
NP_932139.2 Tnrc6c gene product M. musculus 92.3 1897
XP_689365.4 PREDICTED: trinucleotide repeat-containing gene 6C protein-like D. rerio 68.0 1657
Other hits (2 of 18) [Show all]SpeciesId(%)Len(aa)
XP_001104782.2 PREDICTED: trinucleotide repeat-containing gene 6C protein-like M. mulatta 99.5 1724
XP_003913556.1 PREDICTED: trinucleotide repeat-containing gene 6C protein isoform 1 P. anubis 99.5 1724

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; mixed; lymph node; uncharacterized tissue; trachea; liver; larynx; uterus; heart; bladder; blood; eye; thymus; spleen; ovary; lung; embryonic tissue; prostate; placenta; mammary gland; intestine; pancreas; testis; kidney; muscle; parathyroid; bone; skin; ear; connective tissue; ganglia; nerve; vascular; adrenal gland; pineal gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 17
Map position: 17q25.3
UniSTS entry: Chr 17 FLJ20015
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (10)

BC045631.1 Homo sapiens trinucleotide repeat containing 6C, mRNA (cDNA clone IMAGE:5274775), partial cds PA
AK000022.1 Homo sapiens cDNA FLJ20015 fis, clone ADSE00237 A
NM_018996.3 Homo sapiens trinucleotide repeat containing 6C (TNRC6C), transcript variant 2, mRNA PA
AB046802.2 Homo sapiens mRNA for KIAA1582 protein, partial cds P
AK056421.1 Homo sapiens cDNA FLJ31859 fis, clone NT2RP7001231 P
AK098609.1 Homo sapiens cDNA FLJ25743 fis, clone TST05966 P
AK092762.1 Homo sapiens cDNA FLJ35443 fis, clone SMINT2003150, weakly similar to Rattus norvegicus androgen receptor-related apoptosis-associated protein CBL27 mRNA P
AL834429.1 Homo sapiens mRNA; cDNA DKFZp762F095 (from clone DKFZp762F095) P
NM_001142640.1 Homo sapiens trinucleotide repeat containing 6C (TNRC6C), transcript variant 1, mRNA PA
BC039479.1 Homo sapiens, clone IMAGE:5534210, mRNA PA

EST sequences (10 of 246) [Show all sequences]

AI015450.1 Clone IMAGE:1641119 testis 3' read
AI025852.1 Clone IMAGE:1646606 parathyroid 3' read
AA921776.1 Clone IMAGE:1543847 mixed 3' read
AI056208.1 Clone IMAGE:1673538 mixed 3' read
AI078680.1 Clone IMAGE:1667950 parathyroid 3' read
AI079837.1 Clone IMAGE:1659762 embryonic tissue 3' read
AI150633.1 Clone IMAGE:1708385 heart 3' read
BX103789.1 Clone IMAGp998B10321_;_IMAGE:175785 brain
AI188425.1 Clone IMAGE:1723157 placenta 3' read A
AI216394.1 Clone IMAGE:1843854 mixed 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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