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UGID:1632691     UniGene Hs.555886     Homo sapiens (human)   POU6F1
POU class 6 homeobox 1 (POU6F1)

Human protein-coding gene POU6F1. Represented by 106 ESTs from 57 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 1632691 - Hs.555886]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_003918555.1 PREDICTED: POU domain, class 6, transcription factor 1 P. anubis 100.0 300
XP_001148929.1 PREDICTED: POU domain, class 6, transcription factor 1 isoform 1 P. troglodytes 100.0 300
NP_002693.3 POU6F1 gene product H. sapiens 100.0 300
NP_034257.1 Pou6f1 gene product M. musculus 97.3 300
NP_571188.1 pou6f1 gene product D. rerio 75.9 452
NP_610377.1 pou domain motif 3, isoform A D. melanogaster 54.8 294
Other hits (2 of 30) [Show all]SpeciesId(%)Len(aa)
NP_001099216.1 Pou6f1 gene product R. norvegicus 98.0 300
XP_001504359.1 PREDICTED: POU domain, class 6, transcription factor 1-like isoform 1 E. caballus 96.4 578

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; uncharacterized tissue; mixed; eye; muscle; blood; ovary; embryonic tissue; cervix; lung; kidney; prostate; spleen; mammary gland; thymus; testis; stomach; liver; placenta; uterus; connective tissue; salivary gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 12
Map position: 12q13.13
UniSTS entry: Chr 12 RH65190 [Map Viewer]
UniSTS entry: Chr 12 STS-Z21966 [Map Viewer]
UniSTS entry: Chr 12 D12S1904 [Map Viewer]
UniSTS entry: Chr 12 WI-19201 [Map Viewer]
UniSTS entry: Chr 1 D15S1477
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

BC051326.1 Homo sapiens POU class 6 homeobox 1, mRNA (cDNA clone MGC:59843 IMAGE:6275848), complete cds PA
NM_002702.3 Homo sapiens POU class 6 homeobox 1 (POU6F1), transcript variant 1, mRNA PA
BC074765.2 Homo sapiens POU class 6 homeobox 1, mRNA (cDNA clone MGC:103797 IMAGE:30915178), complete cds P
BC107090.1 Homo sapiens POU class 6 homeobox 1, mRNA (cDNA clone IMAGE:40014692), partial cds P
AL832881.1 Homo sapiens mRNA; cDNA DKFZp667J043 (from clone DKFZp667J043) PA
Z21966.1 H.sapiens mPOU homeobox protein mRNA P
L14482.1 Homo sapiens transcription factor 7 (TCFB) mRNA sequence P
NR_026893.1 Homo sapiens POU class 6 homeobox 1 (POU6F1), transcript variant 2, non-coding RNA PA

EST sequences (10 of 106) [Show all sequences]

AA978178.1 Clone IMAGE:1578603 mixed 3' read A
AI003202.1 Clone IMAGE:1685357 brain 3' read
R18890.1 Clone IMAGE:27265 brain 5' read
AI079719.1 Clone IMAGE:1669736 brain 3' read
AI142524.1 Clone IMAGE:1702801 brain 3' read
BX108537.1 Clone IMAGp998B08644_;_IMAGE:289447 brain
R25935.1 Clone IMAGE:36766 brain 5' read
AI202528.1 Clone IMAGE:1943569 prostate 3' read
AI267749.1 Clone IMAGE:2022282 brain
T07035.1 Clone HFBEC60 brain


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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