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UGID:1371611     UniGene Hs.535297     Homo sapiens (human)   ARID5B
AT rich interactive domain 5B (MRF1-like) (ARID5B)

Human protein-coding gene ARID5B. Represented by 305 ESTs from 171 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 1371611 - Hs.535297]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_115575.1 ARID5B gene product H. sapiens 100.0 1187
XP_001165696.1 PREDICTED: AT-rich interactive domain-containing protein 5B isoform 4 P. troglodytes 99.9 1186
NP_076087.2 Arid5b gene product M. musculus 93.3 1187
XP_003199620.1 PREDICTED: AT-rich interactive domain-containing protein 5B-like D. rerio 58.7 1064
Other hits (2 of 20) [Show all]SpeciesId(%)Len(aa)
XP_001093968.1 PREDICTED: AT-rich interactive domain-containing protein 5B isoform 2 M. mulatta 99.2 1187
XP_003903962.1 PREDICTED: AT-rich interactive domain-containing protein 5B-like P. anubis 99.0 944

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: uterus; brain; placenta; mammary gland; lymph node; embryonic tissue; intestine; pharynx; ear; muscle; lung; mixed; vascular; skin; kidney; uncharacterized tissue; ovary; eye; blood; liver; prostate; cervix; esophagus; trachea; testis; bladder; larynx; heart; pancreas; tonsil; thyroid; parathyroid; connective tissue; bone marrow; stomach; mouth; nerve
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 10
Map position: 10q21.2
UniSTS entry: Chr 10 A003N19 [Map Viewer]
UniSTS entry: Chr 10 RH47625 [Map Viewer]
UniSTS entry: Chr 10 RH48313 [Map Viewer]
UniSTS entry: Chr 10 ARID5B_3079
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (16)

AL049471.1 Homo sapiens mRNA; cDNA DKFZp586N012 (from clone DKFZp586N012) A
BX537690.1 Homo sapiens mRNA; cDNA DKFZp686E18111 (from clone DKFZp686E18111) PA
BX648835.1 Homo sapiens mRNA; cDNA DKFZp686H19148 (from clone DKFZp686H19148) PA
BX641020.1 Homo sapiens mRNA; cDNA DKFZp686G23148 (from clone DKFZp686G23148) PA
AK123882.1 Homo sapiens cDNA FLJ41888 fis, clone OCBBF2024463 PA
BC056680.1 Homo sapiens AT rich interactive domain 5B (MRF1-like), mRNA (cDNA clone IMAGE:4248986), partial cds PA
BC066345.1 Homo sapiens AT rich interactive domain 5B (MRF1-like), mRNA (cDNA clone IMAGE:30345306), partial cds PA
NM_032199.2 Homo sapiens AT rich interactive domain 5B (MRF1-like) (ARID5B), transcript variant 1, mRNA PA
BC107800.1 Homo sapiens AT rich interactive domain 5B (MRF1-like), mRNA (cDNA clone IMAGE:4105813), partial cds PA
BC017404.1 Homo sapiens, clone IMAGE:4292351, mRNA A
AK296921.1 Homo sapiens cDNA FLJ60664 complete cds, highly similar to AT-rich interactive domain-containing protein5B P
BC036831.1 Homo sapiens AT rich interactive domain 5B (MRF1-like), mRNA (cDNA clone IMAGE:5529276), partial cds PA
BC015120.1 Homo sapiens AT rich interactive domain 5B (MRF1-like), mRNA (cDNA clone IMAGE:3681098), partial cds PA
AK024803.1 Homo sapiens cDNA: FLJ21150 fis, clone CAS09561 PA
M73837.1 Homo sapiens modulator recognition factor 2 (MRF-2) mRNA, partial cds P
NM_001244638.1 Homo sapiens AT rich interactive domain 5B (MRF1-like) (ARID5B), transcript variant 2, mRNA PA

EST sequences (10 of 305) [Show all sequences]

AI049610.1 Clone IMAGE:1700917 kidney 3' read A
AI052768.1 Clone IMAGE:1671981 uncharacterized tissue 3' read P
AI095137.1 Clone IMAGE:1687211 brain 3' read
AI127390.1 Clone IMAGE:1705492 heart 3' read A
CB052020.1 Clone IMAGE:3290152 uncharacterized tissue 3' read PA
CB052021.1 Clone IMAGE:3290152 uncharacterized tissue 5' read P
AI149153.1 Clone IMAGE:1715089 placenta 3' read A
AI086364.1 Clone IMAGE:1678170 mixed 3' read
BX105043.1 Clone IMAGp998K24258_;_IMAGE:160655 mammary gland
BX101098.1 Clone IMAGp998L241012_;_IMAGE:431015 mixed A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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