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UGID:1293145     UniGene Hs.533770     Homo sapiens (human)   SLC38A1
Solute carrier family 38, member 1 (SLC38A1)

Human protein-coding gene SLC38A1. Represented by 1249 ESTs from 350 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 1293145 - Hs.533770]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001164581.2 PREDICTED: sodium-coupled neutral amino acid transporter 1 isoform 7 P. troglodytes 100.0 502
NP_109599.3 SLC38A1 gene product H. sapiens 100.0 486
NP_001159928.1 Slc38a1 gene product M. musculus 96.1 484
NP_001087075.1 solute carrier family 38, member 2 X. laevis 60.2 486
NP_001005944.2 solute carrier family 38, member 4 D. rerio 58.7 537
Other hits (2 of 24) [Show all]SpeciesId(%)Len(aa)
XP_001094611.1 PREDICTED: sodium-coupled neutral amino acid transporter 1 isoform 5 M. mulatta 99.4 486
XP_003906294.1 PREDICTED: sodium-coupled neutral amino acid transporter 1-like P. anubis 99.1 325

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; placenta; embryonic tissue; intestine; uncharacterized tissue; testis; lymph node; mammary gland; vascular; umbilical cord; muscle; thyroid; bone marrow; liver; kidney; trachea; pituitary gland; lung; thymus; connective tissue; prostate; eye; mixed; cervix; pancreas; spleen; uterus; spinal cord; ascites; ovary; mouth; parathyroid; blood; bone; larynx; amniotic fluid; heart; skin; bladder; esophagus; lymph; stomach; salivary gland; pharynx; pineal gland; adrenal gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 12
Map position: 12q13.11
UniSTS entry: Chr 12 G20591
UniSTS entry: Chr 12 A005Y12
UniSTS entry: Chr 12 D12S1372
UniSTS entry: Chr 12 RH17801
UniSTS entry: Chr 12 RH66777
UniSTS entry: Chr 12 SGC31837 [Map Viewer]
UniSTS entry: Chr 12 STS-W70087
UniSTS entry: Chr 12 WI-19766 [Map Viewer]
UniSTS entry: Chr 12 WI-13331 [Map Viewer]
UniSTS entry: Chr 12 SLC38A1_3684
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (22)

BX648676.1 Homo sapiens mRNA; cDNA DKFZp686B0974 (from clone DKFZp686B0974) PA
BX648495.1 Homo sapiens mRNA; cDNA DKFZp686B0572 (from clone DKFZp686B0572) PA
BX647547.1 Homo sapiens mRNA; cDNA DKFZp686H1697 (from clone DKFZp686H1697) PA
AK024263.1 Homo sapiens cDNA FLJ14201 fis, clone NT2RP3002955
AK025900.1 Homo sapiens cDNA: FLJ22247 fis, clone HRC02648 A
AF271070.1 Homo sapiens amino acid transporter system A1 mRNA, complete cds PA
AF247166.1 Homo sapiens NGT mRNA, complete cds PA
AK225778.1 Homo sapiens mRNA for amino acid transporter system A1 variant, clone: FCC132D05 PA
AK225639.1 Homo sapiens mRNA for amino acid transporter system A1 variant, clone: SPL07576 P
NM_030674.3 Homo sapiens solute carrier family 38, member 1 (SLC38A1), transcript variant 1, mRNA P
NM_001077484.1 Homo sapiens solute carrier family 38, member 1 (SLC38A1), transcript variant 2, mRNA P
AK027825.1 Homo sapiens cDNA FLJ14919 fis, clone PLACE1007243, weakly similar to UNC-47 PROTEIN P
BC010620.1 Homo sapiens solute carrier family 38, member 1, mRNA (cDNA clone MGC:17722 IMAGE:3871101), complete cds PA
AK056670.1 Homo sapiens cDNA FLJ32108 fis, clone OCBBF2001492
AK313731.1 Homo sapiens cDNA, FLJ94331 P
AK308129.1 Homo sapiens cDNA, FLJ98077 P
AK309410.1 Homo sapiens cDNA, FLJ99451 P
AK074949.1 Homo sapiens cDNA FLJ90468 fis, clone NT2RP3002342, highly similar to Solute carrier family 38, member 1 P
AK074851.1 Homo sapiens cDNA FLJ90370 fis, clone NT2RP2004495, weakly similar to Human transporter protein (g17) mRNA P
AK074797.1 Homo sapiens cDNA FLJ90316 fis, clone NT2RP2001495, weakly similar to Human transporter protein (g17) mRNA, complete cds P
AK074758.1 Homo sapiens cDNA FLJ90277 fis, clone NT2RP1000300, weakly similar to Human transporter protein (g17) mRNA P
S77359.1 transcript ch123.Rev [human, RF1,RF48 stomach cancer cell lines, mRNA, 252 nt] A

EST sequences (10 of 1249) [Show all sequences]

AA961047.1 Clone IMAGE:1578810 mixed 3' read
AA961881.1 Clone IMAGE:1598710 uncharacterized tissue 3' read
AA988049.1 Clone IMAGE:1605178 lung 3' read
AI002560.1 Clone IMAGE:1593647 kidney 3' read
R17994.1 Clone IMAGE:32494 brain 5' read
R18407.1 Clone IMAGE:31152 brain 5' read
AI025733.1 Clone IMAGE:1646501 parathyroid 3' read
AI028093.1 Clone IMAGE:1650325 parathyroid 3' read A
AI031786.1 Clone IMAGE:1649966 parathyroid 3' read A
AI031914.1 Clone IMAGE:1649987 parathyroid 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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