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UGID:1272194     UniGene Hs.532296     Homo sapiens (human)   C9orf40
Chromosome 9 open reading frame 40 (C9orf40)

Human protein-coding gene C9orf40. Represented by 131 ESTs from 78 cDNA libraries. Corresponds to reference sequence NM_017998.2. [UniGene 1272194 - Hs.532296]

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_060468.2 C9orf40 gene product H. sapiens 100.0 193
NP_808308.1 D030056L22Rik gene product M. musculus 51.9 161
Other hits (2 of 10) [Show all]SpeciesId(%)Len(aa)
XP_520076.2 PREDICTED: uncharacterized protein C9orf40 homolog P. troglodytes 99.0 196
XP_003911868.1 PREDICTED: uncharacterized protein C9orf40 homolog P. anubis 97.4 192

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; brain; mixed; uncharacterized tissue; mouth; embryonic tissue; blood; prostate; mammary gland; pancreas; lung; eye; adrenal gland; bladder; cervix; ascites; stomach; connective tissue; bone; lymph node; intestine; spleen; placenta; kidney; liver; parathyroid
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 9
Map position: 9q21.13
UniSTS entry: Chr 9 WI-12436 [Map Viewer]
UniSTS entry: Chr 9 SHGC-64302
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (4)

AK000972.1 Homo sapiens cDNA FLJ10110 fis, clone HEMBA1002688 P
NM_017998.2 Homo sapiens chromosome 9 open reading frame 40 (C9orf40), mRNA PA
AK225349.1 Homo sapiens mRNA for Protein C9orf40 variant, clone: HEP13066 P
BC039588.1 Homo sapiens chromosome 9 open reading frame 40, mRNA (cDNA clone MGC:48777 IMAGE:5740394), complete cds PA

EST sequences (10 of 131) [Show all sequences]

AA968731.1 Clone IMAGE:1569938 lung 3' read
AA992869.1 Clone IMAGE:1622673 embryonic tissue 3' read A
AI018160.1 Clone IMAGE:1626359 mixed 3' read A
R18483.1 Clone IMAGE:30153 brain 5' read
AI080231.1 Clone IMAGE:1678496 mixed 3' read A
AI138740.1 Clone IMAGE:1737512 testis 3' read A
AI215002.1 Clone IMAGE:1840146 testis 3' read A
AI221969.1 Clone IMAGE:1843397 mixed 3' read A
AI379885.1 Clone IMAGE:2069424 mixed 3' read A
AI381959.1 Clone IMAGE:2092289 mixed 3' read A

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

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