NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
Finding cDNAs

UGID:1203589     UniGene Hs.529322     Homo sapiens (human)   ATG16L1
Autophagy related 16-like 1 (S. cerevisiae) (ATG16L1)

Human protein-coding gene ATG16L1. Represented by 379 ESTs from 186 cDNA libraries. Corresponds to 5 reference sequences (different isoforms). [UniGene 1203589 - Hs.529322]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001150112.1 PREDICTED: autophagy-related protein 16-1 isoform 10 P. troglodytes 100.0 606
NP_110430.5 ATG16L1 gene product H. sapiens 100.0 606
XP_001114814.1 PREDICTED: autophagy-related protein 16-1 isoform 6 M. mulatta 99.5 606
XP_003908152.1 PREDICTED: autophagy-related protein 16-1 isoform 1 P. anubis 99.5 606
NP_084122.2 Atg16l1 gene product M. musculus 96.2 606
NP_001091437.1 autophagy related 16-like 1 X. laevis 85.5 621
NP_001017854.1 atg16l1 gene product D. rerio 74.5 318
NP_733311.2 CG31033, isoform A D. melanogaster 56.6 297
Other hits (2 of 32) [Show all]SpeciesId(%)Len(aa)
XP_850664.1 PREDICTED: autophagy-related protein 16-1 isoform 2 C. lupus familiaris 97.0 606
NP_001178318.1 autophagy-related protein 16-1 B. taurus 96.4 606

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; uncharacterized tissue; testis; mixed; embryonic tissue; pituitary gland; heart; kidney; connective tissue; lung; prostate; skin; mammary gland; eye; placenta; bone marrow; mouth; amniotic fluid; trachea; spleen; thymus; uterus; intestine; muscle; pharynx; pancreas; thyroid; ovary; lymph node; salivary gland; nerve; cervix; blood; stomach; liver; bone; vascular
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2q37.1
UniSTS entry: Chr 2 WI-11277 [Map Viewer]
UniSTS entry: Chr 2 D2S1507E
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (21)

NM_198890.2 Homo sapiens autophagy related 16-like 1 (S. cerevisiae) (ATG16L1), transcript variant 3, mRNA PA
AK001690.1 Homo sapiens cDNA FLJ10828 fis, clone NT2RP4001122, weakly similar to TIPD PROTEIN P
BC071846.1 Homo sapiens ATG16 autophagy related 16-like 1 (S. cerevisiae), mRNA (cDNA clone IMAGE:6651664), partial cds PA
AY398617.1 Homo sapiens APG16L beta mRNA, complete cds P
NM_017974.3 Homo sapiens autophagy related 16-like 1 (S. cerevisiae) (ATG16L1), transcript variant 2, mRNA PA
AK026330.1 Homo sapiens cDNA: FLJ22677 fis, clone HSI10648 PA
BC000061.2 Homo sapiens cDNA clone IMAGE:3505827, containing frame-shift errors PA
BC117337.1 Homo sapiens ATG16 autophagy related 16-like 1 (S. cerevisiae), mRNA (cDNA clone IMAGE:40125888), partial cds P
NM_030803.6 Homo sapiens autophagy related 16-like 1 (S. cerevisiae) (ATG16L1), transcript variant 1, mRNA PA
BC006253.2 Homo sapiens hypothetical protein FLJ10035, mRNA (cDNA clone IMAGE:3949072), partial cds PA
AK027854.1 Homo sapiens cDNA FLJ14948 fis, clone PLACE2000164, weakly similar to TIPD PROTEIN P
EF079890.1 Homo sapiens clone g3 ATG16 autophagy related 16-like protein 1 (ATG16L1) mRNA, complete cds P
EF079889.1 Homo sapiens clone b2 ATG16 autophagy related 16-like protein 1 (ATG16L1) mRNA, complete cds P
EF560734.1 Homo sapiens clone DKFZp686A1859 ATG16L1 protein (ATG16L1) mRNA, complete cds P
BC013411.2 Homo sapiens hypothetical protein FLJ10035, mRNA (cDNA clone IMAGE:3030066), partial cds PA
AK308400.1 Homo sapiens cDNA, FLJ98348 P
AK074434.1 Homo sapiens cDNA FLJ23854 fis, clone LNG06315 PA
BC143900.1 Homo sapiens ATG16 autophagy related 16-like 1 (S. cerevisiae), mRNA (cDNA clone IMAGE:9052418), partial cds P
NM_001190267.1 Homo sapiens autophagy related 16-like 1 (S. cerevisiae) (ATG16L1), transcript variant 5, mRNA P
NM_001190266.1 Homo sapiens autophagy related 16-like 1 (S. cerevisiae) (ATG16L1), transcript variant 4, mRNA P
JQ924062.1 Homo sapiens autophagy-related protein 16-1 isoform 2 (ATG16L1) mRNA, complete cds

EST sequences (10 of 379) [Show all sequences]

AI014359.1 Clone IMAGE:1611179 uncharacterized tissue 3' read A
AI052357.1 Clone IMAGE:1676021 mixed 3' read A
AI081825.1 Clone IMAGE:1662394 mixed 3' read A
AI093450.1 Clone IMAGE:1695658 uterus 3' read A
AI087338.1 Clone IMAGE:1678325 mixed 3' read A
BX107441.1 Clone IMAGp998I23386_;_IMAGE:200926 mixed
BX089202.1 Clone IMAGp998P1497_;_IMAGE:115453 mixed
AI186920.1 Clone IMAGE:1741130 lung 3' read A
CB157431.1 Clone L17N670205n1-9-E08 liver 5' read
AI198334.1 Clone IMAGE:1861038 brain 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help