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UGID:915904     UniGene Hs.525157     Homo sapiens (human)   TNFSF13B
Tumor necrosis factor (ligand) superfamily, member 13b (TNFSF13B)

Human protein-coding gene TNFSF13B. Represented by 80 ESTs from 53 cDNA libraries. EST representation biased toward neonate. Corresponds to 2 reference sequences (different isoforms). [UniGene 915904 - Hs.525157]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001135794.1 PREDICTED: tumor necrosis factor ligand superfamily member 13B isoform 1 P. troglodytes 100.0 284
NP_006564.1 TNFSF13B gene product H. sapiens 100.0 284
NP_296371.1 Tnfsf13b gene product M. musculus 76.8 296
NP_001107062.1 tnfsf13b gene product D. rerio 51.8 164
Other hits (2 of 17) [Show all]SpeciesId(%)Len(aa)
XP_003914114.1 PREDICTED: tumor necrosis factor ligand superfamily member 13B isoform 1 P. anubis 98.2 284
XP_001082247.1 PREDICTED: tumor necrosis factor ligand superfamily member 13B isoform 2 M. mulatta 97.9 284

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: neonate [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: blood; pharynx; uterus; kidney; lung; brain; vascular; mixed; muscle; uncharacterized tissue; liver; bone marrow; pancreas; placenta; adrenal gland; prostate; testis; thymus; skin; lymph node; eye; ovary
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 13
Map position: 13q32-q34
UniSTS entry: RH93489
UniSTS entry: Chr 13 SHGC-36171 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (19)

AY302751.1 Homo sapiens delta BAFF (TNFSF13b) mRNA, complete cds; alternatively spliced P
AY358881.1 Homo sapiens clone DNA53915 TNFSF13B; BLys (UNQ401) mRNA, complete cds PA
NM_006573.4 Homo sapiens tumor necrosis factor (ligand) superfamily, member 13b (TNFSF13B), transcript variant 1, mRNA PA
AF134715.1 Homo sapiens DTL precusor (DTL) mRNA, complete cds PA
CR541818.1 Homo sapiens full open reading frame cDNA clone RZPDo834D0132D for gene TNFSF13B, tumor necrosis factor (ligand) superfamily, member 13b; complete cds, incl. stopcodon P
AF132600.1 Homo sapiens B-lymphocyte stimulator (BLYS) mRNA, complete cds PA
AF136293.1 Homo sapiens TNF and ApoL related ligand TALL-1 (TALL1) mRNA, complete cds P
AF116456.1 Homo sapiens B-cell activating factor (BAFF) mRNA, complete cds P
AF186114.1 Homo sapiens tumor necrosis factor-like protein ZTNF4 (ZTNF4) mRNA, complete cds P
DQ857728.1 Homo sapiens B cell activating factor transcript variant 4 (TNFSF13B) mRNA, partial sequence; alternatively spliced
DQ857727.1 Homo sapiens B cell activating factor transcript variant 3 (TNFSF13B) mRNA, partial sequence; alternatively spliced
BC020674.1 Homo sapiens tumor necrosis factor (ligand) superfamily, member 13b, mRNA (cDNA clone MGC:22381 IMAGE:4719315), complete cds PA
AK309629.1 Homo sapiens cDNA, FLJ99670 P
NM_001145645.2 Homo sapiens tumor necrosis factor (ligand) superfamily, member 13b (TNFSF13B), transcript variant 2, mRNA PA
AY129228.1 Homo sapiens clone 128-285 B-lymphocyte stimulator (TNFSF13B) mRNA, partial cds P
AY129227.1 Homo sapiens clone 112-285 B-lymphocyte stimulator (TNFSF13B) mRNA, partial cds P
AY129226.1 Homo sapiens clone 78-285 B-lymphocyte stimulator (TNFSF13B) mRNA, partial cds P
AY129225.1 Homo sapiens B-lymphocyte stimulator (TNFSF13B) mRNA, complete cds P
HM636064.1 Homo sapiens Delta4 BAFF (TNFSF13B) mRNA, complete cds, alternatively spliced P

EST sequences (10 of 80) [Show all sequences]

R16882.1 Clone IMAGE:129696 mixed 3' read A
R16934.1 Clone IMAGE:129696 mixed 5' read
AA906714.1 Clone IMAGE:1521793 lung 3' read P
BX110396.1 Clone IMAGp998M0497_;_IMAGE:115371 mixed P
AI446030.1 Clone IMAGE:2143268 pancreas 3' read A
AI749928.1 Clone IMAGE:2356273 vascular 3' read P
AF150302.1 Clone CBLAEH08 blood
AI871491.1 Clone IMAGE:2429997 brain 3' read P
AI950787.1 Clone IMAGE:2547535 lung 3' read A
CD370655.1 Clone UI-H-FT1-bkc-h-12-0-UI lung 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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